POP-OUT | CLOSE
RNA POLYMERASE II STRAND SEPARATED ELONGATION COMPLEX
DOI:10.2210/pdb1sfo/pdb   NDB ID: PH0011
1SFO
ENTRY 1SFO SUPERSEDES 1R9R
Primary Citation
 
 
  •   Molecular Description Hide
    Classification: Transcription/dna RNA Hybrid
    Structure Weight: 477655.30
    Molecule: RNA STRAND
    Polymer: 1 Type: rna Length: 10
    Chains: R
    Details: TRANSCRIPT
    Molecule: DNA STRAND
    Polymer: 2 Type: dna Length: 14
    Chains: T
    Details: TEMPLATE
    Molecule: DNA-directed RNA polymerase II largest subunit
    Polymer: 3 Type: protein Length: 1733
    Chains: A
    EC#: 2.7.7.6   
    Organism Saccharomyces cerevisiae
    Gene Names RPO21 RPB1 RPB220 SUA8 YDL140C D2150
    UniProtKB:   Protein Feature View | Search PDB | P04050  
    Molecule: DNA-directed RNA polymerase II 140 kDa polypeptide
    Polymer: 4 Type: protein Length: 1224
    Chains: B
    EC#: 2.7.7.6   
    Organism Saccharomyces cerevisiae
    Gene Names RPB2 RPB150 RPO22 YOR151C
    UniProtKB:   Protein Feature View | Search PDB | P08518  
    Molecule: DNA-directed RNA polymerase II 45 kDa polypeptide
    Polymer: 5 Type: protein Length: 318
    Chains: C
    EC#: 2.7.7.6   
    Organism Saccharomyces cerevisiae
    Gene Names RPB3 YIL021W
    UniProtKB:   Protein Feature View | Search PDB | P16370  
    Molecule: DNA-directed RNA polymerases I, II, and III 27 kDa polypeptide
    Polymer: 6 Type: protein Length: 215
    Chains: E
    EC#: 2.7.7.6   
    Organism Saccharomyces cerevisiae
    Gene Names RPB5 RPA7 RPC9 YBR154C YBR1204
    UniProtKB:   Protein Feature View | Search PDB | P20434  
    Molecule: DNA-directed RNA polymerases I, II, and III 23 kDa polypeptide
    Polymer: 7 Type: protein Length: 155
    Chains: F
    EC#: 2.7.7.6   
    Organism Saccharomyces cerevisiae
    Gene Names RPO26 RPB6 YPR187W P9677.8
    UniProtKB:   Protein Feature View | Search PDB | P20435  
    Molecule: DNA-directed RNA polymerases I, II, and III 14.5 kDa polypeptide
    Polymer: 8 Type: protein Length: 146
    Chains: H
    EC#: 2.7.7.6   
    Organism Saccharomyces cerevisiae
    Gene Names RPB8 YOR224C YOR50-14
    UniProtKB:   Protein Feature View | Search PDB | P20436  
    Molecule: DNA-directed RNA polymerase II 14.2 kDa polypeptide
    Polymer: 9 Type: protein Length: 122
    Chains: I
    EC#: 2.7.7.6   
    Organism Saccharomyces cerevisiae
    Gene Names RPB9 YGL070C
    UniProtKB:   Protein Feature View | Search PDB | P27999  
    Molecule: DNA-directed RNA polymerases I, II, and III 8.3 kDa polypeptide
    Polymer: 10 Type: protein Length: 70
    Chains: J
    EC#: 2.7.7.6   
    Organism Saccharomyces cerevisiae
    Gene Names RPB10 YOR210W
    UniProtKB:   Protein Feature View | Search PDB | P22139  
    Molecule: DNA-directed RNA polymerase II 13.6 kDa polypeptide
    Polymer: 11 Type: protein Length: 120
    Chains: K
    EC#: 2.7.7.6   
    Organism Saccharomyces cerevisiae
    Gene Names RPB11 YOL005C
    UniProtKB:   Protein Feature View | Search PDB | P38902  
    Molecule: DNA-directed RNA polymerases I, II, and III 7.7 kDa polypeptide
    Polymer: 12 Type: protein Length: 70
    Chains: L
    EC#: 2.7.7.6   
    Organism Saccharomyces cerevisiae
    Gene Names RPC10 RPB12 YHR143W-A YHR143BW
    UniProtKB:   Protein Feature View | Search PDB | P40422  
     
  •   Structure Validation Hide

    Download full validation report    

     
  •   Related Citations in PDB Entry (REMARK 1) Hide
     
  •   Source Hide
    Polymer: 1
    Scientific Name: Synthetic construct   Taxonomy    
    Polymer: 2
    Scientific Name: Synthetic construct   Taxonomy    
    Polymer: 3
    Scientific Name: Saccharomyces cerevisiae   Taxonomy   Common Name: Baker's yeast  
    Polymer: 4
    Scientific Name: Saccharomyces cerevisiae   Taxonomy   Common Name: Baker's yeast  
    Polymer: 5
    Scientific Name: Saccharomyces cerevisiae   Taxonomy   Common Name: Baker's yeast  
    Polymer: 6
    Scientific Name: Saccharomyces cerevisiae   Taxonomy   Common Name: Baker's yeast  
    Polymer: 7
    Scientific Name: Saccharomyces cerevisiae   Taxonomy   Common Name: Baker's yeast  
    Polymer: 8
    Scientific Name: Saccharomyces cerevisiae   Taxonomy   Common Name: Baker's yeast  
    Polymer: 9
    Scientific Name: Saccharomyces cerevisiae   Taxonomy   Common Name: Baker's yeast  
    Polymer: 10
    Scientific Name: Saccharomyces cerevisiae   Taxonomy   Common Name: Baker's yeast  
    Polymer: 11
    Scientific Name: Saccharomyces cerevisiae   Taxonomy   Common Name: Baker's yeast  
    Polymer: 12
    Scientific Name: Saccharomyces cerevisiae   Taxonomy   Common Name: Baker's yeast  
     
  •   Related PDB Entries Hide
    Identifier Details
    1R9S   
    1R9T   
     
  •   Ligand Chemical Component Hide
    Identifier Formula Name View Interactions
    MG
    Search 
    Download 
    MG Mg
    MAGNESIUM ION
    ZN
    Search 
    Download 
    ZN Zn
    ZINC ION
     
  •   External Domain Annotations Hide
     
  •   Structural Biology Knowledgebase Data Hide
     
  • Nucleic Acid Database Hide
    View the NDB ID associated with this structure: PH0011
     
 
Data in orange boxes are gathered from external resources (when available).
 
  Biological Assembly       
Biological assembly 1 assigned by authors
Downloadable viewers:
 
 
 
  •   MyPDB Personal Annotations Hide
     
  •   Deposition Summary Hide
    Authors:   Westover, K.D.,  Bushnell, D.A.,  Kornberg, R.D.

    Deposition:   2004-02-20
    Release:   2004-03-02
    Last Modified (REVDAT):   2009-02-24

    Previous versions:  1R9R
     
  •   Revision History    Hide
    Mouse over text for details
    2011-07-13
    Version format compliance
     
  •   Experimental Details Hide
    Method:   X-RAY DIFFRACTION
    Exp. Data:
      Structure Factors
    EDS  
    Resolution[Å]:   3.61
    R-Value: 0.315 (obs.)
    R-Free: 0.343
    Space Group: C 2
    Unit Cell:
      Length [Å] Angles [°]
    a = 167.08 α = 90.00 
    b = 221.26 β = 100.10 
    c = 193.68 γ = 90.00