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Tubulin-podophyllotoxin: stathmin-like domain complex
1SA1
Primary Citation
 
 
  •   Molecular Description Hide
    Classification: Cell Cycle
    Structure Weight: 219667.30
    Molecule: Tubulin alpha chain
    Polymer: 1 Type: protein Length: 451
    Chains: A, C
    Organism: Bos taurus
    Gene Name: TUBA1D
    UniProtKB: Protein Feature View | Search PDB | Q2HJ86  
    Molecule: Tubulin beta chain
    Polymer: 2 Type: protein Length: 445
    Chains: B, D
    Organism: Bos taurus
    Gene Name: Gene View for TUBB2B
    UniProtKB: Protein Feature View | Search PDB | Q6B856  
    Molecule: Stathmin 4
    Polymer: 3 Type: protein Length: 142
    Chains: E
    Organism: Rattus norvegicus
    Gene Name: Stmn4
    UniProtKB: Protein Feature View | Search PDB | P63043  
     
  •   Structure Validation Hide

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  • MolProbity Ramachandran Plot
     

  •   Related Citations in PDB Entry (REMARK 1) Hide
     
  •   Source Hide
    Polymer: 1
    Scientific Name: Bos taurus   Taxonomy   Common Name: Cattle  
    Polymer: 2
    Scientific Name: Bos taurus   Taxonomy   Common Name: Cattle  
    Polymer: 3
    Scientific Name: Rattus norvegicus   Taxonomy   Common Name: Norway rat Expression System: Escherichia coli bl21(de3)  
     
  •   Related PDB Entries Hide
    Identifier Details
    1SA0   
     
  •   Ligand Chemical Component Hide
    Identifier Formula Name View Interactions
    GDP
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    GDP C10 H15 N5 O11 P2
    GUANOSINE-5'-DIPHOSPHATE
    GDP:1SA1
    GTP
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    GTP C10 H16 N5 O14 P3
    GUANOSINE-5'-TRIPHOSPHATE
    GTP:1SA1
    MG
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    MG Mg
    MAGNESIUM ION
    POD
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    POD C22 H22 O8
    9-HYDROXY-5-(3,4,5-TRIMETHOXYPHENYL)-5,8,8A,9- TETRAHYDROFURO[3',4':6,7]NAPHTHO[2,3-D][1,3]DIOXOL- 6(5AH)-ONE
     
  •   External Ligand Annotations Hide
    Identifier   Binding Affinity (Sequence Identity %)
    POD
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    POD
    IC50: 460 - 1400 nM (98 - 99) - data from BindingDB  
    N/Ain BindingMoad
    N/Ain PDBbind
     
  •   External Domain Annotations Hide
     
  •   Structural Biology Knowledgebase Data Hide
     
 
Data in orange boxes are gathered from external resources (when available).
 
  Biological Assembly       
Biological assembly 1 assigned by authors and generated by PISA (software)
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  •   MyPDB Personal Annotations Hide
     
  •   Deposition Summary Hide
    Authors:   Ravelli, R.B.,  Gigant, B.,  Curmi, P.A.,  Jourdain, I.,  Lachkar, S.,  Sobel, A.,  Knossow, M.

    Deposition:   2004-02-06
    Release:   2004-03-23
    Last Modified (REVDAT):   2009-02-24
     
  •   Revision History    Hide
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    2011-07-13
    Version format compliance
     
  •   Experimental Details Hide
    Method:   X-RAY DIFFRACTION
    Exp. Data:
    N/A
    Resolution[Å]:   4.20
    R-Value: 0.206 (obs.)
    R-Free: 0.259
    Space Group: P 65
    Unit Cell:
      Length [Å] Angles [°]
    a = 328.06 α = 90.00 
    b = 328.06 β = 90.00 
    c = 54.30 γ = 120.00