1S3T

BORATE INHIBITED BACILLUS PASTEURII UREASE CRYSTAL STRUCTURE

Structural Biology Knowledgebase: 1S3T SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.1 Å
  • R-Value Free: 0.205
  • R-Value Work: 0.177

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 1S3T

Classification: HYDROLASE

Total Structure Weight: 87103.49

Macromolecule Entities
Molecule Chains Length Organism Details
Urease gamma subunit A 100 Sporosarcina pasteurii EC#: 3.5.1.5 IUBMB
Mutation: M1X
Gene Name(s): ureA
Urease beta subunit B 126 Sporosarcina pasteurii EC#: 3.5.1.5 IUBMB
Gene Name(s): ureB
Urease alpha subunit C 570 Sporosarcina pasteurii EC#: 3.5.1.5 IUBMB
Mutation: R19E, G28W, Y36T, Y37T, L38Y, K220X, V263L, M420I
Gene Name(s): ureC

Small Molecules
Ligands 3 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
BO3
Query on BO3

C BORIC ACID
B H3 O3
KGBXLFKZBHKPEV-UHFFFAOYSA-N
Ligand Explorer
 
JSmol
NI
Query on NI

C NICKEL (II) ION
Ni
VEQPNABPJHWNSG-UHFFFAOYSA-N
Ligand Explorer
 
JSmol
SO4
Query on SO4

C SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
Ligand Explorer
 
JSmol
Modified Residues 2 Unique
ID Chains Type Formula 2D Diagram Parent
CXM
Query on CXM
A L-PEPTIDE LINKING C6 H11 N O4 S MET
KCX
Query on KCX
C L-PEPTIDE LINKING C7 H14 N2 O4 LYS

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.1 Å
  • R-Value Free: 0.205
  • R-Value Work: 0.177
  • Space Group: P 63 2 2
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 130.91 α = 90.00
b = 130.91 β = 90.00
c = 189.37 γ = 120.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2004-01-14
  • Released Date: 2004-04-06
  • Deposition author(s): Benini, S., Rypniewski, W.R., Wilson, K.S., Ciurli, S., Mangani, S.

Revision History

  • 2015-07-08
    Type: Source and taxonomy | Details: --
  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4
  • 2011-07-13
    Type: Biological assembly | Details: Added software calculated values