1RUP

Crystal structure (G) of native cationic cyclization antibody 4C6 fab at pH 8.5 with a data set collected at APS beamline 19-ID


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.4 Å
  • R-Value Free: 0.212
  • R-Value Work: 0.161

Literature

Macromolecules
Sequence Display for 1RUP

Classification: IMMUNE SYSTEM

Total Structure Weight: 48526.10

Macromolecule Entities
Molecule Chains Length Organism Details
immunoglobulin igg2a, heavy chain L 219 Mus musculus Fragment: fab
immunoglobulin igg2a, light chain H 222 Mus musculus Fragment: fab
Gene Name(s): Igh-1a
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Membrane Protein

Source: inferred by homology | Group: ALPHA-HELICAL

Subgroup Name: Channels: Potassium, Sodium, & Proton Ion-Selective

Protein Name: KvAP Voltage-gated potassium Channel in complex with Fab


Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
BEZ
Query on BEZ

H BENZOIC ACID
C7 H6 O2
WPYMKLBDIGXBTP-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
GOL
Query on GOL

H GLYCEROL
2, (Synonym)
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.4 Å
  • R-Value Free: 0.212
  • R-Value Work: 0.161
  • Space Group: P 41 21 2

Unit Cell:

Length (Å) Angle (°)
a = 64.20 α = 90.00
b = 64.20 β = 90.00
c = 266.48 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2003-12-11
  • Released Date: 2004-03-02
  • Deposition author(s): Zhu, X., Wentworth Jr., P., Wentworth, A.D., Eschenmoser, A., Lerner, R.A., Wilson, I.A.

Revision History

  • Version 1_0: 2004-03-02

    Type: Initial release

  • Version 1_1: 2008-04-29

    Type: Version format compliance

  • Version 1_2: 2011-07-13

    Type: Non-polymer description, Version format compliance