T4 Polynucleotide Kinase bound to 5'-GTCAC-3' ssDNA     DOI:10.2210/pdb1rc8/pdb   NDB ID: PD0493

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Primary Citation       Molecular Description Hide Classification: Transferase/dna Structure Weight: 37260.33   Molecule: 5'-D(*GP*TP*CP*AP*C)-3' Polymer: 1 Type: polydeoxyribonucleotide Length: 5 Chains: B Molecule: Polynucleotide kinase Polymer: 2 Type: polypeptide(L) Length: 301 Chains: A EC#: 2.7.1.78          Source Hide Polymer: 1 Scientific Name: Synthetic construct   Polymer: 2 Scientific Name: Enterobacteria phage t4 Expression System: Escherichia coli bl21(de3)         Related PDB Entries Hide Id Details 1RPZ  T4 Polynucleotide Kinase Bound to 5'-TGCAC-3' ssDNA  1RRC  T4 Polynucleotide Kinase Bound to 5'-GTC-3' ssDNA'        Ligand Chemical Component Hide Identifier Name Formula Interaction View Links ADP     ADENOSINE-5'-DIPHOSPHATE C10 H15 N5 O10 P2 Ligand Explorer CA     CALCIUM ION Ca Ligand Explorer DMS     DIMETHYL SULFOXIDE C2 H6 O S Ligand Explorer       Modified Residues Hide Identifier Name Formula Interaction View Links MSE SELENOMETHIONINE (parent: MET)(type: lPeptideLinking) C5 H11 N O2 Se Ligand Explorer ADP ADENOSINE-5'-DIPHOSPHATE (parent: A)(type: nonPolymer) C10 H15 N5 O10 P2 Ligand Explorer       Derived Data Hide SCOP Classification v1.75 - (2 Domains) CATH Classification v3.2.0 - (2 Domains) GO Terms - (8 Terms)     Reset Layout

Biological Assembly     More Images... View in Jmol Other Viewers close KiNG WebMol QuickPDB FirstGlance Kiosk SimpleViewer Protein Workshop Ligand Explorer Biological assembly assigned by authors         Deposition Summary Hide Authors:   Eastberg, J.H.,   Pelletier, J.,   Stoddard, B.L. Deposition:   2003-11-03 Release:   2004-02-17 Last Modified (REVDAT):   2009-02-24       Experimental Details Hide Method:   X-RAY DIFFRACTION Experimental Data:   Resolution[Å]: 2.75 R-Value: 0.230 (obs.) R-Free: 0.294 Space Group: I 2 2 2 Unit Cell:   Length [Å] Angles [°] a = 82.17 α = 90.00  b = 92.06 β = 90.00  c = 123.39 γ = 90.00