RNA POLYMERASE II STRAND SEPARATED ELONGATION COMPLEX, MISMATCHED NUCLEOTIDE DOI:10.2210/pdb1r9t/pdb   NDB ID: PH0007

1R9T   Display Files  close FASTA Sequence PDB File PDB File (Header) mmCIF File mmCIF File (Header) PDBML/XML File PDBML/XML File (Header)   Download Files  close FASTA Sequence PDB File (Text) PDB File (gz) mmCIF File mmCIF File (gz) PDBML/XML File PDBML/XML File (gz) Structure Factor (Text) Structure Factor (gz) Biological Assembly (gz) (A)   Share this Page  close Facebook Twitter LinkedIn Email Link this Page

Primary Citation       Related Citations in PDB Entry (REMARK 1) Hide     Molecular Description Hide Classification: Transcription/dna RNA Hybrid Structure Weight: 486792.42 Molecule: RNA strand Polymer: 1 Type: rna Length: 10 Chains: R Details: TRANSCRIPT Molecule: DNA template strand Polymer: 2 Type: dna Length: 28 Chains: T Molecule: DNA nontemplate strand Polymer: 3 Type: dna Length: 14 Chains: N Molecule: DNA-directed RNA polymerase II largest subunit Polymer: 4 Type: protein Length: 1733 Chains: A EC#: 2.7.7.6    Organism Saccharomyces cerevisiae Gene Names RPO21 RPB1 RPB220 SUA8 YDL140C D2150 UniProtKB:   Protein Feature View | Search PDB | P04050     Molecule: DNA-directed RNA polymerase II 140 kDa polypeptide Polymer: 5 Type: protein Length: 1224 Chains: B EC#: 2.7.7.6    Organism Saccharomyces cerevisiae Gene Names RPB2 RPB150 RPO22 YOR151C UniProtKB:   Protein Feature View | Search PDB | P08518     Molecule: DNA-directed RNA polymerase II 45 kDa polypeptide Polymer: 6 Type: protein Length: 318 Chains: C EC#: 2.7.7.6    Organism Saccharomyces cerevisiae Gene Names RPB3 YIL021W UniProtKB:   Protein Feature View | Search PDB | P16370     Molecule: DNA-directed RNA polymerases I, II, and III 27 kDa polypeptide Polymer: 7 Type: protein Length: 215 Chains: E EC#: 2.7.7.6    Organism Saccharomyces cerevisiae Gene Names RPB5 RPA7 RPC9 YBR154C YBR1204 UniProtKB:   Protein Feature View | Search PDB | P20434     Molecule: DNA-directed RNA polymerases I, II, and III 23 kDa polypeptide Polymer: 8 Type: protein Length: 155 Chains: F EC#: 2.7.7.6    Organism Saccharomyces cerevisiae Gene Names RPO26 RPB6 YPR187W P9677.8 UniProtKB:   Protein Feature View | Search PDB | P20435     Molecule: DNA-directed RNA polymerases I, II, and III 14.5 kDa polypeptide Polymer: 9 Type: protein Length: 146 Chains: H EC#: 2.7.7.6    Organism Saccharomyces cerevisiae Gene Names RPB8 YOR224C YOR50-14 UniProtKB:   Protein Feature View | Search PDB | P20436     Molecule: DNA-directed RNA polymerase II 14.2 kDa polypeptide Polymer: 10 Type: protein Length: 122 Chains: I EC#: 2.7.7.6    Organism Saccharomyces cerevisiae Gene Names RPB9 YGL070C UniProtKB:   Protein Feature View | Search PDB | P27999     Molecule: DNA-directed RNA polymerases I, II, and III 8.3 kDa polypeptide Polymer: 11 Type: protein Length: 70 Chains: J EC#: 2.7.7.6    Organism Saccharomyces cerevisiae Gene Names RPB10 YOR210W UniProtKB:   Protein Feature View | Search PDB | P22139     Molecule: DNA-directed RNA polymerase II 13.6 kDa polypeptide Polymer: 12 Type: protein Length: 120 Chains: K EC#: 2.7.7.6    Organism Saccharomyces cerevisiae Gene Names RPB11 YOL005C UniProtKB:   Protein Feature View | Search PDB | P38902     Molecule: DNA-directed RNA polymerases I, II, and III 7.7 kDa polypeptide Polymer: 13 Type: protein Length: 70 Chains: L EC#: 2.7.7.6    Organism Saccharomyces cerevisiae Gene Names RPC10 RPB12 YHR143W-A YHR143BW UniProtKB:   Protein Feature View | Search PDB | P40422         Source Hide Polymer: 1 Scientific Name: Synthetic construct   Taxonomy     Polymer: 2 Scientific Name: Synthetic construct   Taxonomy     Polymer: 3 Scientific Name: Synthetic construct   Taxonomy     Polymer: 4 Scientific Name: Saccharomyces cerevisiae   Taxonomy   Common Name: Baker's yeast   Polymer: 5 Scientific Name: Saccharomyces cerevisiae   Taxonomy   Common Name: Baker's yeast   Polymer: 6 Scientific Name: Saccharomyces cerevisiae   Taxonomy   Common Name: Baker's yeast   Polymer: 7 Scientific Name: Saccharomyces cerevisiae   Taxonomy   Common Name: Baker's yeast   Polymer: 8 Scientific Name: Saccharomyces cerevisiae   Taxonomy   Common Name: Baker's yeast   Polymer: 9 Scientific Name: Saccharomyces cerevisiae   Taxonomy   Common Name: Baker's yeast   Polymer: 10 Scientific Name: Saccharomyces cerevisiae   Taxonomy   Common Name: Baker's yeast   Polymer: 11 Scientific Name: Saccharomyces cerevisiae   Taxonomy   Common Name: Baker's yeast   Polymer: 12 Scientific Name: Saccharomyces cerevisiae   Taxonomy   Common Name: Baker's yeast   Polymer: 13 Scientific Name: Saccharomyces cerevisiae   Taxonomy   Common Name: Baker's yeast       Related PDB Entries Hide Identifier Details 1R9R    1R9S        Ligand Chemical Component Hide Identifier Formula Name Interactions ATP Search  Download  C10 H16 N5 O13 P3 ADENOSINE-5'-TRIPHOSPHATE   Ligand Explorer MG Search  Download  Mg MAGNESIUM ION   Ligand Explorer ZN Search  Download  Zn ZINC ION   Ligand Explorer     External Domain Annotations Hide SCOP Classification v1.75: 10 Domains - data from SCOP   CATH Classification v3.4.0: 13 Domains - data from CATH   Pfam Classification: 26 Domains - data from Pfam   GO Terms: 151 Terms - data from GO      Structural Biology Knowledgebase Data Hide   Nucleic Acid Database Hide View the NDB ID associated with this structure: PH0007     Data in orange boxes are gathered from external resources (when available). Reset Layout

Biological Assembly            View in 3D More Images... Biological assembly 1 assigned by authors Downloadable viewers: Simple Viewer Protein Workshop Ligand Explorer Kiosk Viewer Other Viewers  KiNG WebMol QuickPDB FirstGlance         MyPDB Personal Annotations Hide     Deposition Summary Hide Authors:   Westover, K.D.,  Bushnell, D.A.,  Kornberg, R.D. Deposition:   2003-10-30 Release:   2004-11-16 Last Modified (REVDAT):   2009-02-24     Revision History    Hide Mouse over text for details 2011-07-13 Version format compliance     Experimental Details Hide Method:   X-RAY DIFFRACTION Exp. Data:   Structure Factors EDS   Resolution[Å]:   3.50 R-Value: 0.239 (obs.) R-Free: 0.317 Space Group: C 2 Unit Cell:   Length [Å] Angles [°] a = 168.85 α = 90.00  b = 222.96 β = 101.17  c = 193.60 γ = 90.00      Molecule of the Month Hide RNA Polymerase