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Crystal structure of p19 complexed with 19-bp small interfering RNA
DOI:10.2210/pdb1r9f/pdb   NDB ID: PR0106
1R9F
Primary Citation
 
 
  •   Molecular Description Hide
    Classification: Viral Protein/rna
    Structure Weight: 29301.28
    Molecule: 5'-R(*CP*GP*UP*AP*CP*GP*CP*GP*GP*AP*AP*UP*AP*CP*UP*UP*CP*GP*AP*UP*U)-3'
    Polymer: 1 Type: rna Length: 21
    Chains: B
    Molecule: 5'-R(*UP*CP*GP*AP*AP*GP*UP*AP*UP*UP*CP*CP*GP*CP*GP*UP*AP*CP*GP*UP*U)-3'
    Polymer: 2 Type: rna Length: 21
    Chains: C
    Molecule: Core protein P19
    Polymer: 3 Type: protein Length: 136
    Chains: A
    Fragment: Residues 27-158
    Mutation: L144M, L147M
    Organism: Tomato bushy stunt virus
    Gene Name: ORF4
    UniProtKB: Protein Feature View | Search PDB | P11690  
     
  •   Structure Validation Hide

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  • MolProbity Ramachandran Plot
     

  •   Related Citations in PDB Entry (REMARK 1) Hide
     
  •   Source Hide
    Polymer: 1
    Scientific Name: Synthetic construct   Taxonomy    
    Polymer: 2
    Scientific Name: Synthetic construct   Taxonomy    
    Polymer: 3
    Scientific Name: Tomato bushy stunt virus   Taxonomy   Expression System: Escherichia coli bl21(de3)  
     
  •   Ligand Chemical Component Hide
    Identifier Formula Name View Interactions
    SO4
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    SO4 O4 S
    SULFATE ION
     
  •   Modified Residues Hide
    Identifier Formula Parent Type
    MSE
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    MSE C5 H11 N O2 Se MET lPeptideLinking
     
  •   External Domain Annotations Hide
     
  •   Structural Biology Knowledgebase Data Hide
     
  • Nucleic Acid Database Hide
    View the NDB ID associated with this structure: PR0106
     
 
Data in orange boxes are gathered from external resources (when available).
 
  Biological Assembly       
Biological assembly 1 assigned by authors
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  •   Deposition Summary Hide
    Authors:   Ye, K.,  Malinina, L.,  Patel, D.J.

    Deposition:   2003-10-28
    Release:   2004-01-27
    Last Modified (REVDAT):   2009-02-24
     
  •   Revision History    Hide
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    2011-07-13
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  •   Experimental Details Hide
    Method:   X-RAY DIFFRACTION
    Exp. Data:
      Structure Factors
    EDS  
    Resolution[Å]:   1.85
    R-Value: 0.212 (obs.)
    R-Free: 0.230
    Space Group: H 3 2
    Unit Cell:
      Length [Å] Angles [°]
    a = 91.25 α = 90.00 
    b = 91.25 β = 90.00 
    c = 148.63 γ = 120.00