1R4M

APPBP1-UBA3-NEDD8, an E1-ubiquitin-like protein complex

Structural Biology Knowledgebase: 1R4M SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.0 Å
  • R-Value Free: 0.280
  • R-Value Work: 0.240

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 1R4M

Classification: CELL CYCLE

Total Structure Weight: 467457.76

Macromolecule Entities
Molecule Chains Length Organism Details
amyloid beta precursor protein-binding protein 1 A, C, E, G 529 Homo sapiens Mutation: ΔN254, ΔE255, ΔN256, ΔG257, ΔA258
Gene Name(s): NAE1 Gene View APPBP1 HPP1
ubiquitin-activating enzyme E1C B, D, F, H 431 Homo sapiens EC#: 6.3.2 IUBMB
Mutation: C216A
Gene Name(s): UBA3 Gene View UBE1C
Ubiquitin-like protein NEDD8 I, J, K, L 76 Homo sapiens Gene Name(s): NEDD8 Gene View

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
ZN
Query on ZN

F, H, J ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.0 Å
  • R-Value Free: 0.280
  • R-Value Work: 0.240
  • Space Group: P 21 21 21

Unit Cell:

Length (Å) Angle (°)
a = 135.40 α = 90.00
b = 198.90 β = 90.00
c = 209.80 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2003-10-07
  • Released Date: 2003-12-23
  • Deposition author(s): Walden, H., Podgorski, M.S., Holton, J.M., Schulman, B.A.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4