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NMR strucutre of 5'-r(GGACACGAAAUCCCGAAGUAGUGUCC)-3' : an RNA hairpin containing the in vitro selected consensus sequence for nucleolin RBD12
 
 
DOI:10.2210/pdb1qwb/pdb   NDB ID: 1QWB
1QWB
 
Primary Citation
spinning wheel
 
 
  •  
    Move Section Molecular Description Hide
    Classification: RNA
    Structure Weight: 8366.12
     
    Molecule:sNRE26
    Polymer:1Type:polyribonucleotideLength:26
    Chains:A
    Other Details:RNA contains the consensus sequence for the in vitro selected NRE.
     
     
  •  
    Move Section Source Hide
    Polymer: 1
    Scientific Name: Synthetic construct Go to NCBI Taxonomy entry  
     
     
  •  
    Move Section Related PDB Entries Hide
    Id Details
    1IE1  NMR Solution Structure Of An In Vitro Selected RNA Which Is Sequence Specifically Recognized By Hamster Nucleolin Rbd12. 
    1IE2  Solution Structure Of An In Vitro Selected RNA Which Is Sequence Specifically Recognized By Rbd12 Of Hamster Nucleolin. Snre (Anti) 
    1QWA  NMR structure of 5'-r(GGAUGCCUCCCGAGUGCAUCC): an RNA hairpin derived from the mouse 5'ETS that binds nucleolin RBD12. 
     
     
 
 
  •  
    Move Section Deposition Summary Hide
    Authors:   Finger, L.D.,   Trantirek, L.,   Johansson, C.,   Feigon, J.

    Deposition:   2003-09-01
    Release:   2003-11-25
    Last Modified (REVDAT):   2009-02-24
     
     
  •  
    Move Section Experimental Details Hide
    Method:   SOLUTION NMR
    Experimental Data:   Download NMR Restraints  [ NMR Restraint Grid External Link to BMRB ]
    NMR Ensemble
    Conformers Calculated:     17
    Conformers Submitted:     17
    Selection Criteria: all calculated structures submitted,structures with acceptable covalent geometry,structures with favorable non-bond energy,structures with the least restraint violations,structures with the lowest energy
    NMR Refine
    Method: SOLUTION NMR