1QPG

3-PHOSPHOGLYCERATE KINASE, MUTATION R65Q

Structural Biology Knowledgebase: 1QPG SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.4 Å
  • R-Value Observed: 0.185

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 1QPG

Classification: PHOSPHOTRANSFERASE (CARBOXYL ACCEPTOR)

Total Structure Weight: 45357.11

Macromolecule Entities
Molecule Chains Length Organism Details
3-PHOSPHOGLYCERATE KINASE A 415 Saccharomyces cerevisiae EC#: 2.7.2.3 IUBMB
Mutation: R65Q
Gene Name(s): PGK1 Gene View YCR012W YCR12W
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
MAP
Query on MAP

A MAGNESIUM-5'-ADENYLY-IMIDO-TRIPHOSPHATE
C10 H16 Mg N6 O12 P3
QTQJEIANUKJRTB-RSYYIFEXDO
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
3PG
Query on 3PG

A 3-PHOSPHOGLYCERIC ACID
C3 H7 O7 P
OSJPPGNTCRNQQC-UWTATZPHSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
External Ligand Annotations
ID Binding Affinity (Sequence Identity %)
3PG Kd: 110000 nM (99) BindingDB

N/A in BindingMoad
N/A in PDBbind

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.4 Å
  • R-Value Observed: 0.185
  • Space Group: C 1 2 1

Unit Cell:

Length (Å) Angle (°)
a = 96.00 α = 90.00
b = 70.10 β = 122.20
c = 82.30 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 1996-01-04
  • Released Date: 1996-06-10
  • Deposition author(s): Mcphillips, T.M., Hsu, B.T., Sherman, M.A., Mas, M.T., Rees, D.C.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4