1QHD

CRYSTAL STRUCTURE OF VP6, THE MAJOR CAPSID PROTEIN OF GROUP A ROTAVIRUS


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.95 Å
  • R-Value Free: 0.220
  • R-Value Work: 0.188

Literature

Macromolecules
Sequence Display for 1QHD

Classification: VIRAL PROTEIN

Total Structure Weight: 45206.93

Macromolecule Entities
Molecule Chains Length Organism Details
VIRAL CAPSID VP6 A 398 Rotavirus a Mutation: P142Q
Details: ONE MONOMER IN ASYMETRIC UNIT
Gene Name(s):
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 3 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
ZN
Query on ZN

A ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
CA
Query on CA

A CALCIUM ION
Ca
BHPQYMZQTOCNFJ-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
CL
Query on CL

A CHLORIDE ION
Cl
VEXZGXHMUGYJMC-UHFFFAOYSA-M
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
Modified Residues 1 Unique
ID Chains Type Formula 2D Diagram Parent
ACE
Query on ACE
A NON-POLYMER C2 H4 O --

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.95 Å
  • R-Value Free: 0.220
  • R-Value Work: 0.188
  • Space Group: P 41 3 2

Unit Cell:

Length (Å) Angle (°)
a = 157.78 α = 90.00
b = 157.78 β = 90.00
c = 157.78 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 1999-04-29
  • Released Date: 2001-04-13
  • Deposition author(s): Mathieu, M., Petitpas, I., Rey, F.A.

Revision History

  • Version 1_0: 2001-04-13

    Type: Initial release

  • Version 1_1: 2007-10-16

    Type: Version format compliance

  • Version 1_2: 2011-07-13

    Type: Derived calculations, Source and taxonomy, Version format compliance