Escherichia coli Purine Nucleoside Phosphorylase Complexed with Formycin B and Phosphate/Sulfate DOI:10.2210/pdb1pr1/pdb

1PR1   Display Files  close FASTA Sequence PDB File PDB File (Header) mmCIF File mmCIF File (Header) PDBML/XML File PDBML/XML File (Header)   Download Files  close FASTA Sequence PDB File (Text) PDB File (gz) mmCIF File mmCIF File (gz) PDBML/XML File PDBML/XML File (gz) Structure Factor (Text) Structure Factor (gz) Biological Assembly (gz) (A+S)   Share this Page  close Facebook Twitter LinkedIn Email Link this Page

Primary Citation       Related Citations in PDB Entry (REMARK 1) Hide     Molecular Description Hide Classification: Transferase Structure Weight: 79035.90 Molecule: Purine nucleoside phosphorylase Polymer: 1 Type: protein Length: 239 Chains: A, B, C EC#: 2.4.2.1    Organism Escherichia coli Escherichia coli O157:H7 Gene Names deoD Z5986 ECs5343 UniProtKB:   Protein Feature View | Search PDB | P0ABP9         Source Hide Polymer: 1 Scientific Name: Escherichia coli, escherichia coli o157:h7   Taxonomy   Common Name: ,       Related PDB Entries Hide Identifier Details 1A69  E coli PNP with formycin B  1ECP  E coli PNP  1K9S  E coli PNP with formycin A analog  1PK7  E coli PNP with adenosine  1PR0  Escherichia coli Purine Nucleoside Phosphorylase Complexed with Inosine and Phosphate/Sulfate  1PR2  Escherichia coli Purine Nucleoside Phosphorylase Complexed with 9-beta-D-[2-deoxyribofuranosyl]-6-methylpurine and Phosphate/Sulfate  1PR4  Escherichia coli Purine Nucleoside Phosphorylase Complexed with 9-beta-D-ribofuranosyl-6-methylthiopurine and Phosphate/Sulfate  1PR5  Escherichia coli Purine Nucleoside Phosphorylase Complexed with 7-deazaadenosine and Phosphate/Sulfate  1PR6  Escherichia coli Purine Nucleoside Phosphorylase Complexed with 9-beta-D-xylofuranosyladenine and Phosphate/Sulfate      Ligand Chemical Component Hide Identifier Formula Name Interactions FMB Search  Download  C10 H12 N4 O5 FORMYCIN B   Ligand Explorer PO4 Search  Download  O4 P PHOSPHATE ION   Ligand Explorer     External Ligand Annotations Hide Identifier   Binding Affinity (Sequence Identity %) FMB Search  Download  N/A in BindingDB Ki: 5000 nM - data from BindingMOAD   Ki: 5000 nM - data from PDBbind       External Domain Annotations Hide SCOP Classification v1.75: 3 Domains - data from SCOP   CATH Classification v3.4.0: 3 Domains - data from CATH   Pfam Classification: 1 Domain - data from Pfam   GO Terms: 8 Terms - data from GO      Structural Biology Knowledgebase Data Hide     Data in orange boxes are gathered from external resources (when available). Reset Layout

Biological Assembly            View in 3D More Images... Biological assembly 1 assigned by authors and generated by PISA,PQS (software) Downloadable viewers: Simple Viewer Protein Workshop Ligand Explorer Kiosk Viewer Other Viewers  KiNG WebMol QuickPDB FirstGlance         MyPDB Personal Annotations Hide     Deposition Summary Hide Authors:   Bennett, E.M.,  Li, C.,  Allan, P.W.,  Parker, W.B.,  Ealick, S.E. Deposition:   2003-06-19 Release:   2003-11-25 Last Modified (REVDAT):   2011-07-13     Revision History    Hide Mouse over text for details 2011-07-13 Biological assembly 2011-07-13 Version format compliance     Experimental Details Hide Method:   X-RAY DIFFRACTION Exp. Data:   Structure Factors EDS   Resolution[Å]:   2.30 R-Value: 0.217 (obs.) R-Free: 0.271 Space Group: P 61 2 2 Unit Cell:   Length [Å] Angles [°] a = 120.90 α = 90.00  b = 120.90 β = 90.00  c = 240.20 γ = 120.00