1P49

Structure of Human Placental Estrone/DHEA Sulfatase

Structural Biology Knowledgebase: 1P49 SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.6 Å
  • R-Value Free: 0.301
  • R-Value Work: 0.254

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 1P49

Classification: HYDROLASE

Total Structure Weight: 64214.73

Macromolecule Entities
Molecule Chains Length Organism Details
STERYL-SULFATASE A 562 Homo sapiens EC#: 3.1.6.2 IUBMB
Mutation: C75X
Gene Name(s): STS Gene View ARSC1
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Membrane Protein

Source: mpstruc | Group: ALPHA-HELICAL

Subgroup Name: Hydrolases

Protein Name: Estrone Sulfatase


Small Molecules
Ligands 4 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
BOG
Query on BOG

A B-OCTYLGLUCOSIDE
C14 H28 O6
HEGSGKPQLMEBJL-RKQHYHRCSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
NAG
Query on NAG

A N-ACETYL-D-GLUCOSAMINE
C8 H15 N O6
OVRNDRQMDRJTHS-FMDGEEDCSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
PO4
Query on PO4

A PHOSPHATE ION
O4 P
NBIIXXVUZAFLBC-UHFFFAOYSA-K
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
CA
Query on CA

A CALCIUM ION
Ca
BHPQYMZQTOCNFJ-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
Modified Residues 1 Unique
ID Chains Type Formula 2D Diagram Parent
ALS
Query on ALS
A L-PEPTIDE LINKING C3 H7 N O7 S ALA

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.6 Å
  • R-Value Free: 0.301
  • R-Value Work: 0.254
  • Space Group: P 3 2 1

Unit Cell:

Length (Å) Angle (°)
a = 116.98 α = 90.00
b = 116.98 β = 90.00
c = 102.66 γ = 120.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2003-04-21
  • Released Date: 2003-08-12
  • Deposition author(s): Hernandez-Guzman, F.G., Higashiyama, T., Pangborn, W., Osawa, Y., Ghosh, D.

Revision History

  • 2015-12-02
    Type: Non-polymer description | Details: --
  • 2011-07-13
    Type: Biological assembly | Details: Added software calculated values
  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4