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Decoding Center & Peptidyl transferase center from the X-ray structure of the Thermus thermophilus 70S ribosome, aligned to the low resolution Cryo-EM map of E.coli 70S Ribosome
1MVR
Primary Citation
 
 
  •   Molecular Description Hide
    Classification: Ribosome
    Structure Weight: 110230.22
    Molecule: mRNA, triplet codon (A-site)
    Polymer: 1 Type: rna Length: 3
    Chains: 1
    Details: based on coordinates from 1GIX, 30S Subunit
    Organism Escherichia coli K-12
    Molecule: Helix 34 of 16S rRNA
    Polymer: 2 Type: rna Length: 45
    Chains: A
    Details: based on coordinates from 1GIX, 30S Subunit
    Organism Escherichia coli K-12
    Molecule: Helix 44 of 16S rRNA
    Polymer: 3 Type: rna Length: 96
    Chains: B
    Details: based on coordinates from 1GIX, 30S Subunit
    Organism Escherichia coli K-12
    Molecule: Helix 69 of 23S rRNA
    Polymer: 4 Type: rna Length: 19
    Chains: C
    Details: based on coordinates from 1GIY, 50S Subunit
    Organism Escherichia coli K-12
    Molecule: Helix 89 of 23S rRNA
    Polymer: 5 Type: rna Length: 59
    Chains: D
    Details: based on coordinates from 1GIY, 50S Subunit
    Organism Escherichia coli K-12
    Molecule: Helix 93 of 23S rRNA
    Polymer: 6 Type: rna Length: 27
    Chains: E
    Details: based on coordinates from 1GIY, 50S Subunit
    Organism Escherichia coli K-12
    Molecule: 30S RIBOSOMAL PROTEIN S12
    Polymer: 7 Type: protein Length: 135
    Chains: O
    Details: based on coordinates from 1GIX, 30S Subunit
    Organism Escherichia coli K-12
    Gene Names rpsL TTHA1697
    UniProtKB:   Protein Feature View | Search PDB | Q5SHN3  
    Molecule: 50S ribosomal protein L11
    Polymer: 8 Type: protein Length: 140
    Chains: L
    Details: based on coordinates from 1GIY, 50S Subunit
    Organism Escherichia coli K-12
    Gene Names rplK TM_0454
    UniProtKB:   Protein Feature View | Search PDB | P29395  
     
  •   Related Citations in PDB Entry (REMARK 1) Hide
     
  •   Source Hide
    Polymer: 1
    Scientific Name: Escherichia coli   Taxonomy    
    Polymer: 2
    Scientific Name: Escherichia coli   Taxonomy    
    Polymer: 3
    Scientific Name: Escherichia coli   Taxonomy    
    Polymer: 4
    Scientific Name: Escherichia coli   Taxonomy    
    Polymer: 5
    Scientific Name: Escherichia coli   Taxonomy    
    Polymer: 6
    Scientific Name: Escherichia coli   Taxonomy    
    Polymer: 7
    Scientific Name: Escherichia coli   Taxonomy    
    Polymer: 8
    Scientific Name: Escherichia coli   Taxonomy    
     
  •   Related PDB Entries Hide
    Identifier Details
    1GIX  Crystal structure of the Ribosome at 5.5 A resolution--30S Ribosome subunit, three tRNA, and mRNA molecules 
    1GIY  Crystal structure of the Ribosome at 5.5 A resolution--50S Ribosome subunit, three tRNA, and mRNA molecules 
    1GQE  Polypeptide chain Release Factor 2 (RF2) from E.coli 
    1MI6  Docking of the modified RF2 X-ray structure into the Low Resolution Cryo-EM map of RF2 E.coli 70S Ribosome Complex 
     
  •   External Domain Annotations Hide
     
  •   Structural Biology Knowledgebase Data Hide
     
 
Data in orange boxes are gathered from external resources (when available).
 
  Biological Assembly       
Biological assembly 1 assigned by authors
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