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CRYSTAL STRUCTURE OF PHOSPHONATE-INHIBITED D-ALA-D-ALA PEPTIDASE REVEALS AN ANALOG OF A TETRAHEDRAL TRANSITION STATE
1MPL
Primary Citation
 
 
  •   Molecular Description Hide
    Classification: Hydrolase
    Structure Weight: 38221.65
    Molecule: D-alanyl-D-alanine carboxypeptidase
    Polymer: 1 Type: protein Length: 349
    Chains: A
    EC#: 3.4.16.4   
    Fragment: DD-Peptidase
    Organism Streptomyces sp. R61
    UniProtKB:   Protein Feature View | Search PDB | P15555  
     
  •   Structure Validation Hide

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  •   Related Citations in PDB Entry (REMARK 1) Hide
     
  •   Source Hide
    Polymer: 1
    Scientific Name: Streptomyces sp.   Taxonomy    
     
  •   Related PDB Entries Hide
    Identifier Details
    1IKG  MICHAELIS COMPLEX OF INACTIVE STREPTOMYCES R61 DD-PEPTIDASE WITH A SPECIFIC PEPTIDOGLYCAN SUBSTRATE FRAGMENT 
    1IKI  COMPLEX OF STREPTOMYCES R61 DD-PEPTIDASE WITH THE PRODUCTS OF A SPECIFIC PEPTIDOGLYCAN SUBSTRATE FRAGMENT 
     
  •   Ligand Chemical Component Hide
    Identifier Formula Name View Interactions
    GOL
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    GOL C3 H8 O3
    GLYCEROL
    RE1
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    RE1 C11 H21 N3 O7 P
    GLYCYL-L-A-AMINOPIMELYL-E-(D-2-AMINOETHYL)PHOSPHONATE
    RE1:1MPL
     
  •   External Ligand Annotations Hide
    Identifier   Binding Affinity (Sequence Identity %)
    RE1
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    RE1
    N/Ain BindingDB
    N/Ain BindingMoad
    Ki: 170000 nM - data from PDBbind  
     
  •   External Domain Annotations Hide
     
  •   Structural Biology Knowledgebase Data Hide
     
 
Data in orange boxes are gathered from external resources (when available).
 
  Biological Assembly       
Biological assembly 1 assigned by authors
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