1MDF

CRYSTAL STRUCTURE OF DhbE IN ABSENCE OF SUBSTRATE

Structural Biology Knowledgebase: 1MDF SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.5 Å
  • R-Value Free: 0.275
  • R-Value Work: 0.204

Literature

Macromolecules
Sequence Display for 1MDF

Classification: LIGASE

Total Structure Weight: 60180.90

Macromolecule Entities
Molecule Chains Length Organism Details
2,3-dihydroxybenzoate-AMP ligase A 539 Bacillus subtilis EC#: 6.3.2 IUBMB
Gene Name(s): dhbE entE BSU31980
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
SO4
Query on SO4

A SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.5 Å
  • R-Value Free: 0.275
  • R-Value Work: 0.204
  • Space Group: P 31

Unit Cell:

Length (Å) Angle (°)
a = 65.45 α = 90.00
b = 65.45 β = 90.00
c = 106.72 γ = 120.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2002-08-07
  • Released Date: 2002-09-11
  • Deposition author(s): May, J.J., Kessler, N., Marahiel, M.A., Stubbs, M.T.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4