1M4H

Crystal Structure of Beta-secretase complexed with Inhibitor OM00-3


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.1 Å
  • R-Value Free: 0.271
  • R-Value Work: 0.216

Literature

Macromolecules
Sequence Display for 1M4H

Classification: HYDROLASE / HYDROLASE INHIBITOR

Total Structure Weight: 89126.49

Macromolecule Entities
Molecule Chains Length Organism Details
beta-Secretase A, B 391 Homo sapiens EC#: 3.4.23.46 IUBMB 4.3.1.23 IUBMB
Fragment: Protease Domain
Gene Name(s): BACE1 Gene View BACE KIAA1149
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Inhibitor OM00-3 C, D 7 Synthetic construct

Small Molecules
Biologically Interesting Molecules 1 Unique
ID Chains Name Type/Class 2D Diagram 3D Interactions
PRD_000289
Query on PRD_000289
C, D BETA-SECRETASE INHIBITOR OM00-3 Peptide-like /
Inhibitor
Ligand Explorer Electron Density (JSmol) Electron Density (JSmol) Electron Density (JSmol) Electron Density (JSmol) Electron Density (JSmol) Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.1 Å
  • R-Value Free: 0.271
  • R-Value Work: 0.216
  • Space Group: P 21 21 21

Unit Cell:

Length (Å) Angle (°)
a = 86.45 α = 90.00
b = 88.79 β = 90.00
c = 130.95 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2002-07-02
  • Released Date: 2002-08-28
  • Deposition author(s): Hong, L., Turner, R.T., Koelsch, G., Ghosh, A.K., Tang, J.

Revision History

  • Version 1_0: 2002-08-28

    Type: Initial release

  • Version 1_1: 2008-04-28

    Type: Version format compliance

  • Version 1_2: 2011-07-13

    Type: Atomic model, Database references, Derived calculations, Non-polymer description, Structure summary, Version format compliance

  • Version 1_3: 2012-12-12

    Type: Other

  • Version 1_4: 2017-04-05

    Type: Other