LIGAND BINDING ALTERS THE STRUCTURE AND DYNAMICS OF NUCLEOSOMAL DNA DOI:10.2210/pdb1m1a/pdb   NDB ID: PD0330

1M1A   Display Files  close FASTA Sequence PDB File PDB File (Header) mmCIF File mmCIF File (Header) PDBML/XML File PDBML/XML File (Header)   Download Files  close FASTA Sequence PDB File (Text) PDB File (gz) mmCIF File mmCIF File (gz) PDBML/XML File PDBML/XML File (gz) Biological Assembly (gz) (A)   Share this Page  close Facebook Twitter LinkedIn Email Link this Page

Primary Citation       Related Citations in PDB Entry (REMARK 1) Hide     Molecular Description Hide Classification: Structural Protein/dna Structure Weight: 199589.11 Molecule: Palindromic 146 Base Pair DNA Fragment Polymer: 1 Type: dna Length: 146 Chains: I, J Molecule: Histone H3.2 Polymer: 2 Type: protein Length: 135 Chains: A, E Organism Xenopus laevis Gene Name h3f3c UniProtKB:   Protein Feature View | Search PDB | P02302     Molecule: Histone H4 Polymer: 3 Type: protein Length: 102 Chains: B, F Organism Xenopus laevis UniProtKB:   Protein Feature View | Search PDB | P62799     Molecule: Histone H2A.1 Polymer: 4 Type: protein Length: 129 Chains: C, G Organism Xenopus laevis UniProtKB:   Protein Feature View | Search PDB | P06897     Molecule: Histone H2B.1 Polymer: 5 Type: protein Length: 125 Chains: D, H Organism Xenopus laevis UniProtKB:   Protein Feature View | Search PDB | P02281         Source Hide Polymer: 1 Scientific Name: Synthetic construct   Taxonomy     Polymer: 2 Scientific Name: Xenopus laevis   Taxonomy   Common Name: African clawed frog Expression System: Escherichia coli   Polymer: 3 Scientific Name: Xenopus laevis   Taxonomy   Common Name: African clawed frog Expression System: Escherichia coli   Polymer: 4 Scientific Name: Xenopus laevis   Taxonomy   Common Name: African clawed frog Expression System: Escherichia coli   Polymer: 5 Scientific Name: Xenopus laevis   Taxonomy   Common Name: African clawed frog Expression System: Escherichia coli       Related PDB Entries Hide Identifier Details 1AOI  Original nucleosome core particle structure.  1M18  Nucleosome core particle structure with related ligand, Polyamide 1 bound.  1M19  Nucleosome core particle structure with related ligand, Polyamide 2 bound.      Ligand Chemical Component Hide Identifier Formula Name Interactions ABU Search  Download  C4 H9 N O2 GAMMA-AMINO-BUTANOIC ACID   Ligand Explorer BAL Search  Download  C3 H7 N O2 BETA-ALANINE   Ligand Explorer DIB Search  Download  C5 H14 N2 3-AMINO-(DIMETHYLPROPYLAMINE)   Ligand Explorer IMT Search  Download  C5 H7 N3 O2 4-AMINO-(1-METHYLIMIDAZOLE)-2-CARBOXYLIC ACID   Ligand Explorer MN Search  Download  Mn MANGANESE (II) ION   Ligand Explorer PYB Search  Download  C6 H8 N2 O2 4-AMINO-(1-METHYLPYRROLE)-2-CARBOXYLIC ACID   Ligand Explorer     External Domain Annotations Hide SCOP Classification v1.75: 8 Domains - data from SCOP   CATH Classification v3.4.0: 8 Domains - data from CATH   Pfam Classification: 7 Domains - data from Pfam   GO Terms: 19 Terms - data from GO      Structural Biology Knowledgebase Data Hide   Nucleic Acid Database Hide View the NDB ID associated with this structure: PD0330     Data in orange boxes are gathered from external resources (when available). Reset Layout

Biological Assembly            View in 3D More Images... Biological assembly 1 assigned by authors Downloadable viewers: Simple Viewer Protein Workshop Ligand Explorer Kiosk Viewer Other Viewers  KiNG WebMol QuickPDB FirstGlance         MyPDB Personal Annotations Hide     Deposition Summary Hide Authors:   Suto, R.K.,  Edayathumangalam, R.S.,  White, C.L.,  Melander, C.,  Gottesfeld, J.M.,  Dervan, P.B.,  Luger, K. Deposition:   2002-06-18 Release:   2003-02-18 Last Modified (REVDAT):   2011-07-13     Revision History    Hide Mouse over text for details 2011-07-13 Version format compliance 2011-07-13 Non-polymer description     Experimental Details Hide Method:   X-RAY DIFFRACTION Exp. Data: N/A Resolution[Å]:   2.65 R-Value: 0.223 (work) R-Free: 0.267 Space Group: P 21 21 21 Unit Cell:   Length [Å] Angles [°] a = 106.72 α = 90.00  b = 109.20 β = 90.00  c = 177.35 γ = 90.00      Molecule of the Month Hide Nucleosome