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ZEBULARINE: A NOVEL DNA METHYLATION INHIBITOR THAT FORMS A COVALENT COMPLEX WITH DNA METHYLTRANSFERASE
DOI:10.2210/pdb1m0e/pdb   NDB ID: PD0327
1M0E
Primary Citation
 
 
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  •   Molecular Description Hide
    Classification: Transferase/dna
    Structure Weight: 44738.74
    Molecule: 5'-D(P*CP*CP*AP*TP*GP*CP*GP*CP*TP*GP*AP*C)-3'
    Polymer: 1 Type: dna Length: 12
    Chains: C
    Molecule: 5'-D(P*GP*TP*CP*AP*GP*(Z)P*GP*CP*AP*TP*GP*G)-3'
    Polymer: 2 Type: dna Length: 12
    Chains: D
    Molecule: Modification methylase HhaI
    Polymer: 3 Type: protein Length: 327
    Chains: A
    EC#: 2.1.1.37   
    Organism Haemophilus haemolyticus
    Gene Name hhaIM
    UniProtKB:   Protein Feature View | Search PDB | P05102  
     
  •   Source Hide
    Polymer: 1
    Scientific Name: Synthetic construct   Taxonomy    
    Polymer: 2
    Scientific Name: Synthetic construct   Taxonomy    
    Polymer: 3
    Scientific Name: Haemophilus haemolyticus   Taxonomy   Expression System: Escherichia coli  
     
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    Identifier Details
    9MHT  CYTOSINE-SPECIFIC METHYLTRANSFERASE HHAI/DNA COMPLEX 
     
  •   Ligand Chemical Component Hide
    Identifier Formula Name Interactions
    SAH
    Search 
    Download      		SAH C14 H20 N6 O5 S
    S-ADENOSYL-L-HOMOCYSTEINE
    		SAH:1M0E
     
  •   Modified Residues Hide
    Identifier Formula Parent Type
    Z
    Search      		Z C9 H13 N2 O7 P DC dnaLinking
     
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  • Nucleic Acid Database Hide
    View the NDB ID associated with this structure: PD0327
     
 
Data in orange boxes are gathered from external resources (when available).
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  •   Deposition Summary Hide
    Authors:   Zhou, L.,  Cheng, X.,  Connolly, B.A.,  Dickman, M.J.,  Hurd, P.J.,  Hornby, D.P.

    Deposition:   2002-06-12
    Release:   2002-09-18
    Last Modified (REVDAT):   2009-02-24
     
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    2011-07-13
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  •   Experimental Details Hide
    Method:   X-RAY DIFFRACTION
    Exp. Data:
    N/A
    Resolution[Å]:   2.50
    R-Value: 0.177 (work)
    R-Free: 0.243
    Space Group: H 3 2
    Unit Cell:
      Length [Å] Angles [°]
    a = 96.19 α = 90.00 
    b = 96.19 β = 90.00 
    c = 315.75 γ = 120.00