1K7L

The 2.5 Angstrom resolution crystal structure of the human PPARalpha ligand binding domain bound with GW409544 and a co-activator peptide.

Structural Biology Knowledgebase: 1K7L SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.5 Å
  • R-Value Free: 0.284
  • R-Value Work: 0.247

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 1K7L

Classification: TRANSCRIPTION

Total Structure Weight: 142872.27

Macromolecule Entities
Molecule Chains Length Organism Details
Peroxisome proliferator activated receptor alpha A, C, E, G 288 Homo sapiens Fragment: ligand binding domain - residues 192 - 468
Gene Name(s): PPARA Gene View NR1C1 PPAR
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
steroid receptor coactivator B, D, F, H 21 Homo sapiens EC#: 2.3.1.48 IUBMB
Fragment: src-1 peptide
Gene Name(s): NCOA1 Gene View BHLHE74 SRC1
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
544
Query on 544

A, C, E, G 2-(1-METHYL-3-OXO-3-PHENYL-PROPYLAMINO)-3- {4-[2-(5-METHYL-2-PHENYL-OXAZOL-4-YL)-ETHOXY]- PHENYL}-PROPIONIC ACID
GW409544 (Synonym)
C31 H30 N2 O5
GGUVRMBIEPYOKL-WMVCGJOFSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
YT3
Query on YT3

C, E YTTRIUM (III) ION
Y
GRTBAGCGDOYUBE-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
External Ligand Annotations
ID Binding Affinity (Sequence Identity %)
544 EC50: 2 - 240 nM (100) BindingDB
Ki: 2 nM (100) BindingDB

N/A in BindingMoad
N/A in PDBbind

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.5 Å
  • R-Value Free: 0.284
  • R-Value Work: 0.247
  • Space Group: P 21 21 21

Unit Cell:

Length (Å) Angle (°)
a = 95.56 α = 90.00
b = 121.60 β = 90.00
c = 121.99 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2001-10-19
  • Released Date: 2001-12-05
  • Deposition author(s): Xu, H.E., Lambert, M.H., Montana, V.G., Moore, L.B., Collins, J.L., Oplinger, J.A., Kliewer, S.A., Gampe Jr., R.T., McKee, D.D., Moore, J.T., Willson, T.M.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4