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CRYSTAL STRUCTURE OF HIV-1 REVERSE TRANSCRIPTASE IN COMPLEX WITH 739W94
1JLQ
Primary Citation
 
 
  •   Molecular Description Hide
    Classification: Transferase
    Structure Weight: 116281.65
    Molecule: HIV-1 RT, A-CHAIN
    Polymer: 1 Type: protein Length: 560
    Chains: A
    EC#: 2.7.7.49    2.7.7.7    3.1.26.13   
    Fragment: P66
    Organism HIV-1 M:B_HXB2R
    Gene Name gag-pol
    UniProtKB:   Protein Feature View | Search PDB | P04585  
    Molecule: HIV-1 RT, B-CHAIN
    Polymer: 2 Type: protein Length: 440
    Chains: B
    EC#: 2.7.7.49    2.7.7.7    3.1.26.13   
    Fragment: P51
    Organism HIV-1 M:B_HXB2R
    Gene Name gag-pol
    UniProtKB:   Protein Feature View | Search PDB | P04585  
     
  •   Structure Validation Hide

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  •   Related Citations in PDB Entry (REMARK 1) Hide
     
  •   Source Hide
    Polymer: 1
    Scientific Name: Hiv-1 m:b_hxb2r   Taxonomy   Expression System: Escherichia coli  
    Polymer: 2
    Scientific Name: Hiv-1 m:b_hxb2r   Taxonomy   Expression System: Escherichia coli  
     
  •   Related PDB Entries Hide
    Identifier Details
    1C0T  HIV-1 RT COMPLEXED WITH BM+21.1326 
    1C0U  HIV-1 RT COMPLEXED WITH BM+50.0934 
    1C1B  HIV-1 RT COMPLEXED WITH GCA-186 
    1C1C  HIV-1 RT COMPLEXED WITH TNK-6123 
    1DTQ  HIV-1 RT COMPLEXED WITH PETT-1 
    1DTT  HIV-1 RT COMPLEXED WITH PETT-2 
    1EP4  HIV-1 RT COMPLEXED WITH S-1153 
    1FK9  HIV-1 RT COMPLEXED WITH DMP-226 (EFAVIRENZ) 
    1FKO  K103N MUTANT HIV-1 RT COMPLEXED WITH DMP-226 (EFAVIRENZ) 
    1FKP  K103N MUTANT HIV-1 RT COMPLEXED WITH NEVIRAPINE 
    1JKH  Y181C MUTANT HIV-1 RT COMPLEXED WITH DMP-226 (EFAVIRENZ) 
    1JLA  Y181C MUTANT HIV-1 RT COMPLEXED TNK-651 
    1JLB  Y181C MUTANT HIV-1 RT COMPLEXED WITH NEVIRAPINE 
    1JLC  Y181C MUTANT HIV-1 RT COMPLEXED WITH PETT-2 
    1JLE  Y188C MUTANT HIV-1 RT 
    1JLF  Y188C MUTANT HIV-1 RT COMPLEXED WITH NEVIRAPINE 
    1JLG  Y188C MUTANT HIV-1 RT COMPLEXED WITH UC-781 
    1KLM  HIV-1 RT COMPLEXED WITH BHAP (U-90152) 
    1REV  HIV-1 RT COMPLEXED WITH 9-CL-TIBO 
    1RT1  HIV-1 RT COMPLEXED WITH MKC-442 
    1RT2  HIV-1 RT COMPLEXED WITH TNK-651 
    1RT3  AZT DRUG RESISTANT HIV-1 RT MUTANT (RTMC) COMPLEXED WITH 1051U91 
    1RT4  HIV-1 RT COMPLEXED WITH UC-781 
    1RT5  HIV-1 RT COMPLEXED WITH UC-10 
    1RT6  HIV-1 RT COMPLEXED WITH UC-38 
    1RT7  HIV-1 RT COMPLEXED WITH UC-84 
    1RTH  HIV-1 RT COMPLEXED WITH 1051U91 
    1RTI  HIV-1 RT COMPLEXED WITH HEPT 
    1RTJ  HIV-1 RT 
    1VRT  HIV-1 RT COMPLEXED WITH NEVIRAPINE 
    1VRU  HIV-1 RT COMPLEXED WITH ALPHA-APA 
     
  •   Ligand Chemical Component Hide
    Identifier Formula Name View Interactions
    SBN
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    SBN C15 H14 N2 O2 S
    2-AMINO-6-(3,5-DIMETHYLPHENYL)SULFONYLBENZONITRILE
    SBN:1JLQ
     
  •   External Ligand Annotations Hide
    Identifier   Binding Affinity (Sequence Identity %)
    SBN
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    SBN
    IC50: 7 - 7.1 nM (99) - data from BindingDB  
    N/Ain BindingMoad
    IC50: 7 nM - data from PDBbind  
     
  •   Modified Residues Hide
    Identifier Formula Parent Type
    CSD
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    CSD C3 H7 N O4 S CYS lPeptideLinking
     
  •   External Domain Annotations Hide
     
  •   Structural Biology Knowledgebase Data Hide
     
 
Data in orange boxes are gathered from external resources (when available).
 
  Biological Assembly       
Biological assembly 1 assigned by authors and generated by PISA (software)
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  •   MyPDB Personal Annotations Hide
     
  •   Deposition Summary Hide
    Authors:   Ren, J.,  Stuart, D.I.,  Stammers, D.K.

    Deposition:   2001-07-16
    Release:   2001-08-22
    Last Modified (REVDAT):   2009-02-24
     
  •   Revision History    Hide
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    2011-07-13
    Version format compliance
     
  •   Experimental Details Hide
    Method:   X-RAY DIFFRACTION
    Exp. Data:
      Structure Factors
    EDS  
    Resolution[Å]:   3.00
    R-Value: 0.219 (obs.)
    R-Free: 0.267
    Space Group: P 21 21 21
    Unit Cell:
      Length [Å] Angles [°]
    a = 141.10 α = 90.00 
    b = 110.90 β = 90.00 
    c = 73.10 γ = 90.00