1IU5

X-ray Crystal Structure of the rubredoxin mutant from Pyrococcus Furiosus

Structural Biology Knowledgebase: 1IU5 SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.5 Å
  • R-Value Free: 0.203
  • R-Value Work: 0.187

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 1IU5

Classification: ELECTRON TRANSPORT

Total Structure Weight: 5919.36

Macromolecule Entities
Molecule Chains Length Organism Details
rubredoxin A 53 Pyrococcus furiosus Mutation: W3Y, I23V, L32I
Gene Name(s): rub PF1282
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
FE
Query on FE

A FE (III) ION
Fe
VTLYFUHAOXGGBS-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
DOD
Query on DOD

A DEUTERATED WATER
D2 O
XLYOFNOQVPJJNP-ZSJDYOACSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.5 Å
  • R-Value Free: 0.203
  • R-Value Work: 0.187
  • Space Group: P 21 21 21
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 34.48 α = 90.00
b = 35.70 β = 90.00
c = 43.16 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2002-02-27
  • Released Date: 2002-08-27
  • Deposition author(s): Chatake, T., Kurihara, K., Tanaka, I., Tsyba, I., Bau, R., Jenney, F.E., Adams, M.W.W., Niimura, N.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4
  • 2011-07-13
    Type: Non-polymer description | Details: chemical name/synonym update