1I1D

CRYSTAL STRUCTURE OF YEAST GNA1 BOUND TO COA AND GLNAC-6P

Structural Biology Knowledgebase: 1I1D SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.8 Å
  • R-Value Free: 0.223
  • R-Value Work: 0.183

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 1I1D

Classification: TRANSFERASE

Total Structure Weight: 75772.53

Macromolecule Entities
Molecule Chains Length Organism Details
GLUCOSAMINE-PHOSPHATE N-ACETYLTRANSFERASE A, B, C, D 161 Saccharomyces cerevisiae EC#: 2.3.1.4 IUBMB
Mutation: S39C
Gene Name(s): GNA1 PAT1 YFL017C
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 3 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
COA
Query on COA

A, B COENZYME A
C21 H36 N7 O16 P3 S
RGJOEKWQDUBAIZ-IBOSZNHHSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
16G
Query on 16G

A, B, D N-ACETYL-D-GLUCOSAMINE-6-PHOSPHATE
C8 H16 N O9 P
BRGMHAYQAZFZDJ-PVFLNQBWSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
IMD
Query on IMD

A IMIDAZOLE
C3 H5 N2
RAXXELZNTBOGNW-UHFFFAOYSA-O
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.8 Å
  • R-Value Free: 0.223
  • R-Value Work: 0.183
  • Space Group: C 1 2 1
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 156.01 α = 90.00
b = 51.62 β = 107.98
c = 91.65 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2001-02-01
  • Released Date: 2001-05-16
  • Deposition author(s): Peneff, C., Mengin-Lecreulx, D., Bourne, Y.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4