1GZQ

CD1B IN COMPLEX WITH PHOPHATIDYLINOSITOL

Structural Biology Knowledgebase: 1GZQ SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.26 Å
  • R-Value Free: 0.237
  • R-Value Work: 0.203

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 1GZQ

Classification: GLYCOPROTEIN

Total Structure Weight: 46459.96

Macromolecule Entities
Molecule Chains Length Organism Details
T-CELL SURFACE GLYCOPROTEIN CD1B A 300 Homo sapiens Fragment: RESIDUES 18-295
Gene Name(s): CD1B Gene View
B2-MICROGLOBULIN B 100 Homo sapiens Gene Name(s): B2M Gene View CDABP0092 HDCMA22P

Small Molecules
Ligands 4 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
PII
Query on PII

A 2-[(HYDROXY{[(2R,3R,5S,6R)-2,3,4,5,6-PENTAHYDROXYCYCLOHEXYL]OXY}PHOSPHORYL)OXY]- 1-[(PALMITOYLOXY)METHYL]ETHYL HEPTADECANOATE
C42 H81 O13 P
QVAGJHIIXLLVCI-KSGPIMHQSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
TWT
Query on TWT

A DOCOSANE
C22 H46
HOWGUJZVBDQJKV-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
D12
Query on D12

A DODECANE
C12 H26
SNRUBQQJIBEYMU-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
NO3
Query on NO3

A NITRATE ION
N O3
NHNBFGGVMKEFGY-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.26 Å
  • R-Value Free: 0.237
  • R-Value Work: 0.203
  • Space Group: C 2 2 21
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 87.88 α = 90.00
b = 177.00 β = 90.00
c = 75.28 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2002-05-24
  • Released Date: 2002-07-31
  • Deposition author(s): Gadola, S.D., Zaccai, N.R., Harlos, K., Shepherd, D., Ritter, G., Schmidt, R.R., Jones, E.Y., Cerundolo, V.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4