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CRYSTAL STRUCTURE OF THE RIBOSOME AT 5.5 A RESOLUTION. THIS FILE, 1GIY, CONTAINS THE 50S RIBOSOME SUBUNIT. THE 30S RIBOSOME SUBUNIT, THREE TRNA, AND MRNA MOLECULES ARE IN THE FILE 1GIX
DOI:10.2210/pdb1giy/pdb   NDB ID: RR0032
1GIY
Split Entry
The asymmetric unit for this structure is composed of multiple PDB entries:
1GIX   1GIY  
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The complete entry has been assigned PDB ID 4V42 and is available for download in PDBx/mmCIF and PDBML/XML formats from the FTP archive at:
ftp://ftp.wwpdb.org/pub/pdb/data/large_structures/mmCIF/4v42.cif.gz
ftp://ftp.wwpdb.org/pub/pdb/data/large_structures/XML/4v42.xml.gz
 
Primary Citation
 
 
  •   Molecular Description Hide
    Classification: Ribosome
    Structure Weight: 1344684.23
    Molecule: 50S 23S RIBOSOMAL RNA
    Polymer: 1 Type: rna Length: 2916
    Chains: A
    Organism: Thermus thermophilus
    Molecule: 50S 5S RIBOSOMAL RNA
    Polymer: 2 Type: rna Length: 123
    Chains: B
    Organism: Thermus thermophilus
    Molecule: 50S RIBOSOMAL PROTEIN L1
    Polymer: 3 Type: protein Length: 228
    Chains: C
    Organism: Thermus thermophilus
    Gene Names: rplA TTHA0246
    UniProtKB: Protein Feature View | Search PDB | Q5SLP7  
    Molecule: 50S RIBOSOMAL PROTEIN L2
    Polymer: 4 Type: protein Length: 178
    Chains: D
    Organism: Thermus thermophilus
    Gene Names: rplB TTHA1689
    UniProtKB: Protein Feature View | Search PDB | P60405  
    Molecule: 50S RIBOSOMAL PROTEIN L3
    Polymer: 5 Type: protein Length: 338
    Chains: E
    Organism: Thermus thermophilus
    Gene Names: rplC TTHA1692
    UniProtKB: Protein Feature View | Search PDB | Q5SHN8  
    Molecule: 50S RIBOSOMAL PROTEIN L4
    Polymer: 6 Type: protein Length: 246
    Chains: F
    Organism: Thermus thermophilus
    Molecule: 50S RIBOSOMAL PROTEIN L5
    Polymer: 7 Type: protein Length: 176
    Chains: G
    Organism: Thermus thermophilus
    Gene Names: rpl5 rrnAC1598
    UniProtKB: Protein Feature View | Search PDB | P14124  
    Molecule: 50S RIBOSOMAL PROTEIN L6
    Polymer: 8 Type: protein Length: 177
    Chains: H
    Organism: Thermus thermophilus
    Gene Names: rplF TTHA1677
    UniProtKB: Protein Feature View | Search PDB | Q5SHQ3  
    Molecule: 50S RIBOSOMAL PROTEIN L7/L12
    Polymer: 9 Type: protein Length: 128
    Chains: I, J
    Organism: Thermus thermophilus
    Gene Names: rplL TTHA0210
    UniProtKB: Protein Feature View | Search PDB | Q8VVE2  
    Molecule: 50S RIBOSOMAL PROTEIN L9
    Polymer: 10 Type: protein Length: 149
    Chains: K
    Organism: Thermus thermophilus
    Gene Names: rplI TTHA0242
    UniProtKB: Protein Feature View | Search PDB | Q5SLQ1  
    Molecule: 50S RIBOSOMAL PROTEIN L11
    Polymer: 11 Type: protein Length: 141
    Chains: L
    Organism: Thermus thermophilus
    Gene Names: rplK TTHA0247
    UniProtKB: Protein Feature View | Search PDB | Q5SLP6  
    Molecule: 50S RIBOSOMAL PROTEIN L13
    Polymer: 12 Type: protein Length: 145
    Chains: M
    Organism: Thermus thermophilus
    Gene Names: rpl13 rrnAC0065
    UniProtKB: Protein Feature View | Search PDB | P29198  
    Molecule: 50S RIBOSOMAL PROTEIN L14
    Polymer: 13 Type: protein Length: 122
    Chains: N
    Organism: Thermus thermophilus
    Gene Names: rplN TTHA1682
    UniProtKB: Protein Feature View | Search PDB | Q5SHP8  
    Molecule: 50S RIBOSOMAL PROTEIN L15
    Polymer: 14 Type: protein Length: 164
    Chains: O
    Organism: Thermus thermophilus
    Molecule: 50S RIBOSOMAL PROTEIN L16
    Polymer: 15 Type: protein Length: 138
    Chains: P
    Organism: Thermus thermophilus
    Molecule: 50S RIBOSOMAL PROTEIN L18
    Polymer: 16 Type: protein Length: 186
    Chains: Q
    Organism: Thermus thermophilus
    Gene Names: rpl18p rrnAC1593
    UniProtKB: Protein Feature View | Search PDB | P14123  
    Molecule: 50S RIBOSOMAL PROTEIN L19
    Polymer: 17 Type: protein Length: 66
    Chains: R
    Organism: Thermus thermophilus
    Molecule: 50S RIBOSOMAL PROTEIN L22
    Polymer: 18 Type: protein Length: 113
    Chains: S
    Organism: Thermus thermophilus
    Gene Names: rplV TTHA1687
    UniProtKB: Protein Feature View | Search PDB | Q5SHP3  
    Molecule: 50S RIBOSOMAL PROTEIN L23
    Polymer: 19 Type: protein Length: 84
    Chains: T
    Organism: Thermus thermophilus
    Gene Names: rpl23p rrnAC1609
    UniProtKB: Protein Feature View | Search PDB | P12732  
    Molecule: 50S RIBOSOMAL PROTEIN L24
    Polymer: 20 Type: protein Length: 119
    Chains: U
    Organism: Thermus thermophilus
    Gene Names: rpl24p rrnAC1601
    UniProtKB: Protein Feature View | Search PDB | P10972  
    Molecule: 50S RIBOSOMAL PROTEIN L25
    Polymer: 21 Type: protein Length: 94
    Chains: V
    Organism: Thermus thermophilus
    Molecule: 50S RIBOSOMAL PROTEIN L29
    Polymer: 22 Type: protein Length: 70
    Chains: W
    Organism: Thermus thermophilus
    Molecule: 50S RIBOSOMAL PROTEIN L30
    Polymer: 23 Type: protein Length: 60
    Chains: X
    Organism: Thermus thermophilus
    Gene Names: rpmD TTHA1674
    UniProtKB: Protein Feature View | Search PDB | Q5SHQ6  
     
  •   Structure Validation Hide

    Download full validation report    

     

  •   Related Citations in PDB Entry (REMARK 1) Hide
     
  •   Source Hide
    Polymer: 1
    Scientific Name: Thermus thermophilus   Taxonomy    
    Polymer: 2
    Scientific Name: Thermus thermophilus   Taxonomy    
    Polymer: 3
    Scientific Name: Thermus thermophilus   Taxonomy    
    Polymer: 4
    Scientific Name: Thermus thermophilus   Taxonomy    
    Polymer: 5
    Scientific Name: Thermus thermophilus   Taxonomy    
    Polymer: 6
    Scientific Name: Thermus thermophilus   Taxonomy    
    Polymer: 7
    Scientific Name: Thermus thermophilus   Taxonomy    
    Polymer: 8
    Scientific Name: Thermus thermophilus   Taxonomy    
    Polymer: 9
    Scientific Name: Thermus thermophilus   Taxonomy    
    Polymer: 10
    Scientific Name: Thermus thermophilus   Taxonomy    
    Polymer: 11
    Scientific Name: Thermus thermophilus   Taxonomy    
    Polymer: 12
    Scientific Name: Thermus thermophilus   Taxonomy    
    Polymer: 13
    Scientific Name: Thermus thermophilus   Taxonomy    
    Polymer: 14
    Scientific Name: Thermus thermophilus   Taxonomy    
    Polymer: 15
    Scientific Name: Thermus thermophilus   Taxonomy    
    Polymer: 16
    Scientific Name: Thermus thermophilus   Taxonomy    
    Polymer: 17
    Scientific Name: Thermus thermophilus   Taxonomy    
    Polymer: 18
    Scientific Name: Thermus thermophilus   Taxonomy    
    Polymer: 19
    Scientific Name: Thermus thermophilus   Taxonomy    
    Polymer: 20
    Scientific Name: Thermus thermophilus   Taxonomy    
    Polymer: 21
    Scientific Name: Thermus thermophilus   Taxonomy    
    Polymer: 22
    Scientific Name: Thermus thermophilus   Taxonomy    
    Polymer: 23
    Scientific Name: Thermus thermophilus   Taxonomy    
     
  •   Related PDB Entries Hide
    Identifier Details
    486D  7.5A model of 70S ribosome 
     
  •   External Domain Annotations Hide
     
  •   Structural Biology Knowledgebase Data Hide
     
  • Nucleic Acid Database Hide
    View the NDB ID associated with this structure: RR0032
     
 
Data in orange boxes are gathered from external resources (when available).
 
  Biological Assembly       
Composite of PDB entries (1GIX and 1GIY)