HIV-1 GP120 CORE COMPLEXED WITH CD4 AND A NEUTRALIZING HUMAN ANTIBODY DOI:10.2210/pdb1gc1/pdb

1GC1   Display Files  close FASTA Sequence PDB File PDB File (Header) mmCIF File mmCIF File (Header) PDBML/XML File PDBML/XML File (Header)   Download Files  close FASTA Sequence PDB File (Text) PDB File (gz) mmCIF File mmCIF File (gz) PDBML/XML File PDBML/XML File (gz) Biological Assembly 1 (gz) (A+S) Biological Assembly 2 (gz) (A+S)   Share this Page  close Facebook Twitter LinkedIn Email Link this Page

Primary Citation       Related Citations in PDB Entry (REMARK 1) Hide     Molecular Description Hide Classification: Viral Protein/receptor/immune System Structure Weight: 106803.28 Molecule: ENVELOPE PROTEIN GP120 Polymer: 1 Type: protein Length: 321 Chains: G Fragment: CORE Mutation: (GARS) SUBSTITUTION AT THE N TERMINUS, GLY ALA GLY SUBSTITUTIONS FOR THE V1/V2 AND V3 LOOPS Organism Human immunodeficiency virus 1 Gene Name env UniProtKB:   Protein Feature View | Search PDB | P04578     Molecule: CD4 Polymer: 2 Type: protein Length: 185 Chains: C Fragment: D1D2, N-TERMINAL TWO DOMAIN FRAGMENT Mutation: S184N, I185T Organism Homo sapiens Gene Name CD4 UniProtKB:   Protein Feature View | Search PDB | P01730     Molecule: ANTIBODY 17B Polymer: 3 Type: protein Length: 213 Chains: L Fragment: ANTIGEN-BINDING FRAGMENT, FAB Details: MONOCLONAL ANTIBODY 17B BINDS TO A CD4-INDUCED SITE ON GP120 Organism Homo sapiens Molecule: ANTIBODY 17B Polymer: 4 Type: protein Length: 229 Chains: H Fragment: ANTIGEN-BINDING FRAGMENT, FAB Details: MONOCLONAL ANTIBODY 17B BINDS TO A CD4-INDUCED SITE ON GP120 Organism Homo sapiens     Source Hide Polymer: 1 Scientific Name: Human immunodeficiency virus 1   Taxonomy   Expression System: Drosophila melanogaster   Polymer: 2 Scientific Name: Homo sapiens   Taxonomy   Common Name: Human Expression System: Cricetulus griseus   Polymer: 3 Scientific Name: Homo sapiens   Taxonomy   Common Name: Human Expression System: Mus musculus   Polymer: 4 Scientific Name: Homo sapiens   Taxonomy   Common Name: Human Expression System: Mus musculus   Polymer: 6 Scientific Name: Synthetic construct   Taxonomy     Polymer: 7 Scientific Name: Synthetic construct   Taxonomy         Ligand Chemical Component Hide Identifier Formula Name Interactions FUC Search  Download  C6 H12 O5 ALPHA-L-FUCOSE   Ligand Explorer NAG Search  Download  C8 H15 N O6 N-ACETYL-D-GLUCOSAMINE   Ligand Explorer NDG Search  Download  C8 H15 N O6 2-(ACETYLAMINO)-2-DEOXY-A-D-GLUCOPYRANOSE   Ligand Explorer     External Domain Annotations Hide SCOP Classification v1.75: 7 Domains - data from SCOP   CATH Classification v3.4.0: 7 Domains - data from CATH   Pfam Classification: 20 Domains - data from Pfam       Structural Biology Knowledgebase Data Hide     Data in orange boxes are gathered from external resources (when available). Reset Layout

Biological Assembly 1            View in 3D More Images... Biological assembly 1 assigned by authors and generated by PISA (software)Biological assembly 2 assigned by authors and generated by PISA (software) Downloadable viewers: Simple Viewer Protein Workshop Ligand Explorer Kiosk Viewer Other Viewers  KiNG WebMol QuickPDB FirstGlance         MyPDB Personal Annotations Hide     Deposition Summary Hide Authors:   Kwong, P.D.,  Wyatt, R.,  Robinson, J.,  Sweet, R.W.,  Sodroski, J.,  Hendrickson, W.A. Deposition:   1998-06-15 Release:   1998-07-08 Last Modified (REVDAT):   2011-07-13     Revision History    Hide Mouse over text for details 2011-07-13 Version format compliance 2011-07-13 Non-polymer description     Experimental Details Hide Method:   X-RAY DIFFRACTION Exp. Data: N/A Resolution[Å]:   2.50 R-Value: 0.210 (obs.) R-Free: 0.302 Space Group: P 2 2 21 Unit Cell:   Length [Å] Angles [°] a = 71.64 α = 90.00  b = 88.13 β = 90.00  c = 196.70 γ = 90.00      Molecule of the Month Hide Epidermal Growth Factor Nanobodies Antibodies T-Cell Receptor Hemagglutinin