1F0U

BOVINE TRYPSIN COMPLEXED WITH RPR128515

Structural Biology Knowledgebase: 1F0U SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.9 Å
  • R-Value Observed: 0.172

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 1F0U

Classification: HYDROLASE

Total Structure Weight: 26039.55

Macromolecule Entities
Molecule Chains Length Organism Details
TRYPSIN A 243 Bos taurus EC#: 3.4.21.4 IUBMB
Gene Name(s):
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 3 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
RPR
Query on RPR

A 3-[(3'-AMINOMETHYL-BIPHENYL-4-CARBONYL)-AMINO]- 2-(3-CARBAMIMIDOYL-BENZYL)-BUTYRIC ACID METHYL ESTER
RPR128515 (Synonym)
C27 H30 N4 O3
XFKVLKLCLYJKNF-MZNJEOGPSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
SO4
Query on SO4

A SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
CA
Query on CA

A CALCIUM ION
Ca
BHPQYMZQTOCNFJ-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
External Ligand Annotations
ID Binding Affinity (Sequence Identity %)
RPR Ki: 69 nM (100) BindingDB

Ki: 69 nM  BindingMOAD
Ki: 69 nM  PDBbind

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.9 Å
  • R-Value Observed: 0.172
  • Space Group: P 21 21 21
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 63.73 α = 90.00
b = 63.89 β = 90.00
c = 69.17 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2000-05-17
  • Released Date: 2000-09-20
  • Deposition author(s): Maignan, S., Guilloteau, J.P., Pouzieux, S., Choi-Sledeski, Y.M., Becker, M.R., Klein, S.I., Ewing, W.R., Pauls, H.W., Spada, A.P., Mikol, V.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4