1E5A

STRUCTURE OF HUMAN TRANSTHYRETIN COMPLEXED WITH BROMOPHENOLS: A NEW MODE OF BINDING

Structural Biology Knowledgebase: 1E5A SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.8 Å
  • R-Value Free: 0.262
  • R-Value Work: 0.214

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 1E5A

Classification: PROTEIN TRANSPORT

Total Structure Weight: 28216.58

Macromolecule Entities
Molecule Chains Length Organism Details
TRANSTHYRETIN A, B 127 Homo sapiens Mutation: Q63E
Gene Name(s): TTR Gene View PALB

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
TBP
Query on TBP

A, B 2,4,6-TRIBROMOPHENOL
C6 H3 Br3 O
BSWWXRFVMJHFBN-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
External Ligand Annotations
ID Binding Affinity (Sequence Identity %)
TBP N/A in BindingDB
Kd: 23 nM  BindingMOAD
Kd: 23 nM  PDBbind

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.8 Å
  • R-Value Free: 0.262
  • R-Value Work: 0.214
  • Space Group: P 21 21 2

Unit Cell:

Length (Å) Angle (°)
a = 42.80 α = 90.00
b = 84.90 β = 90.00
c = 64.40 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2000-07-20
  • Released Date: 2000-08-29
  • Deposition author(s): Ghosh, M., Meerts, I.A.T.M., Cook, A., Bergman, A., Brouwer, A., Johnson, L.N.

Revision History

  • 2011-08-10
    Type: Function and keywords | Details: KEYWDS
  • 2011-08-10
    Type: Citation | Details: REMARK 1
  • 2011-08-10
    Type: Binding sites and description | Details: REMARK 800,SITE
  • 2011-08-10
    Type: Atom nomenclature | Details: HETATM
  • 2011-08-10
    Type: Biological assembly | Details: REMARK 300,REMARK 350
  • 2011-08-10
    Type: Version format compliance | Details: REMARK 4
  • 2011-08-10
    Type: Polymer description | Details: COMPND
  • 2011-08-10
    Type: Entry authorship | Details: AUTHOR
  • 2011-08-10
    Type: Other | Details: REMARK 375,REMARK 465,REMARK 525,MASTER
  • 2011-08-10
    Type: Data collection | Details: REMARK 200
  • 2011-08-10
    Type: Non-polymer description | Details: FORMUL,HET
  • 2011-08-10
    Type: Geometry validation | Details: REMARK 500