1E2P

Thymidine kinase, DHBT


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.5 Å
  • R-Value Free: 0.261
  • R-Value Work: 0.209

Literature

Macromolecules
Sequence Display for 1E2P

Classification: TRANSFERASE

Total Structure Weight: 72178.73

Macromolecule Entities
Molecule Chains Length Organism Details
THYMIDINE KINASE A, B 331 Human alphaherpesvirus 1 EC#: 2.7.1.21 IUBMB
Mutation: P321S
Gene Name(s): TK UL23
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
CCV
Query on CCV

A, B 6-[3-HYDROXY-2-(HYDROXYMETHYL)PROPYL]-5-METHYL- 2,4(1H,3H)-PYRIMIDINEDIONE
6-(DIHYDROXY-ISOBUTYL)-THYMINE (Synonym)
C9 H14 N2 O4
CLCPDSJUXHDRGX-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
SO4
Query on SO4

A, B SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
External Ligand Annotations
ID Binding Affinity (Sequence Identity %)
CCV N/A in BindingDB
Ki: 27000 nM  BindingMOAD
N/A in PDBbind

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.5 Å
  • R-Value Free: 0.261
  • R-Value Work: 0.209
  • Space Group: C 2 2 21

Unit Cell:

Length (Å) Angle (°)
a = 113.70 α = 90.00
b = 117.60 β = 90.00
c = 108.30 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2000-05-23
  • Released Date: 2001-04-26
  • Deposition author(s): Schulz, G.E., Kessler, U.

Revision History

  • Version 1_0: 2001-04-26

    Type: Initial release

  • Version 1_1: 2011-05-08

    Type: Version format compliance

  • Version 1_2: 2011-07-13

    Type: Version format compliance