1E2L

KINETICS AND CRYSTAL STRUCTURE OF THE WILD-TYPE AND THE ENGINEERED Y101F MUTANT OF HERPES SIMPLEX VIRUS TYPE 1 THYMIDINE KINASE INTERACTING WITH (NORTH)-METHANOCARBA-THYMIDINE

Structural Biology Knowledgebase: 1E2L SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.4 Å
  • R-Value Free: 0.280
  • R-Value Work: 0.210

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 1E2L

Classification: THYMIDINE KINASE

Total Structure Weight: 72223.45

Macromolecule Entities
Molecule Chains Length Organism Details
THYMIDINE KINASE A, B 331 Human herpesvirus 1 EC#: 2.7.1.21 IUBMB
Mutation: Y101F
Gene Name(s): TK UL23

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
SO4
Query on SO4

A, B SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
Ligand Explorer
 
JSmol
TMC
Query on TMC

A, B 1-[4-HYDROXY-5-(HYDROXYMETHYL)BICYCLO[3.1.0]HEX- 2-YL]-5-METHYLPYRIMIDINE-2,4(1H,3H)-DIONE
(N)-METHANOCARBA-THYMIDINE (Synonym)
C12 H16 N2 O4
NOWRLNPOENZFHP-ARHDFHRDSA-N
Ligand Explorer
 
JSmol
External Ligand Annotations
ID Binding Affinity (Sequence Identity %)
TMC N/A in BindingDB
Ki: 51500 nM  BindingMOAD
Ki: 51500 nM  PDBbind

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.4 Å
  • R-Value Free: 0.280
  • R-Value Work: 0.210
  • Space Group: C 2 2 21
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 114.00 α = 90.00
b = 118.30 β = 90.00
c = 108.60 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2000-05-23
  • Released Date: 2000-08-18
  • Deposition author(s): Vogt, J., Scapozza, L., Schulz, G.E.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4