1DFP

FACTOR D INHIBITED BY DIISOPROPYL FLUOROPHOSPHATE

Structural Biology Knowledgebase: 1DFP SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.4 Å
  • R-Value Free: 0.228
  • R-Value Work: 0.148

Literature

Macromolecules
Sequence Display for 1DFP

Classification: SERINE PROTEASE

Total Structure Weight: 49210.25

Macromolecule Entities
Molecule Chains Length Organism Details
FACTOR D A, B 228 Homo sapiens EC#: 3.4.21.46 IUBMB
Details: DIISOPROPYL PHOSPHORYL GROUP LINKED TO SERINE 195
Gene Name(s): CFD Gene View DF PFD
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
DFP
Query on DFP

A, B DIISOPROPYL PHOSPHONATE
C6 H15 O3 P
BLKXLEPPVDUHBY-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.4 Å
  • R-Value Free: 0.228
  • R-Value Work: 0.148
  • Space Group: P 1 21 1
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 40.60 α = 90.00
b = 125.70 β = 110.05
c = 41.90 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 1997-02-18
  • Released Date: 1998-02-25
  • Deposition author(s): Cole, L.B., Chu, N., Kilpatrick, J.M., Volanakis, J.E., Narayana, S.V.L., Babu, Y.S.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4