CRYSTAL STRUCTURE OF HUMAN ALPHA THROMBIN IN COMPLEX WITH 5-AMIDINOINDOLE-4-BENZYLPIPERIDINE INHIBITOR DOI:10.2210/pdb1d4p/pdb

1D4P   Display Files  close FASTA Sequence PDB File PDB File (Header) mmCIF File mmCIF File (Header) PDBML/XML File PDBML/XML File (Header)   Download Files  close FASTA Sequence PDB File (Text) PDB File (gz) mmCIF File mmCIF File (gz) PDBML/XML File PDBML/XML File (gz) Biological Assembly (gz) (A)   Share this Page  close Facebook Twitter LinkedIn Email Link this Page

Primary Citation       Related Citations in PDB Entry (REMARK 1) Hide     Molecular Description Hide Classification: Hydrolase/hydrolase Inhibitor Structure Weight: 36054.22 Molecule: ALPHA-THROMBIN Polymer: 1 Type: protein Length: 36 Chains: A EC#: 3.4.21.5    Fragment: LIGHT CHAIN Organism Homo sapiens Gene Name F2 UniProtKB:   Protein Feature View | Search PDB | P00734     Molecule: ALPHA-THROMBIN Polymer: 2 Type: protein Length: 259 Chains: B EC#: 3.4.21.5    Fragment: HEAVY CHAIN Organism Homo sapiens Gene Name F2 UniProtKB:   Protein Feature View | Search PDB | P00734   Molecule: HIRUGEN Polymer: 3 Type: protein Length: 12 Chains: H Organism Hirudo medicinalis UniProtKB:   Protein Feature View | Search PDB | P01050         Source Hide Polymer: 1 Scientific Name: Homo sapiens   Taxonomy   Common Name: Human   Polymer: 2 Scientific Name: Homo sapiens   Taxonomy   Common Name: Human   Polymer: 3 Scientific Name: Hirudo medicinalis   Taxonomy   Common Name: Medicinal leech       Related PDB Entries Hide Identifier Details 1D3D  CRYSTAL STRUCTURE OF HUMAN ALPHA-THROMBIN IN COMPLEX WITH BENZO[B]THIOPHENE INHIBITOR 4  1D3P  CRYSTAL STRUCTURE OF HUMAN ALPHA THROMBIN IN COMPLEX WITH BENZO[B]THIOPHENE INHIBITOR 3  1D3Q  CRYSTAL STRUCTURE OF HUMAN ALPHA THROMBIN IN COMPLEX WITH BENZO[B]THIOPHENE INHIBITOR 2  1D3T  CRYSTAL STRUCTURE OF HUMAN ALPHA THROMBIN IN COMPLEX WITH BENZO[B]THIOPHENE INHIBITOR 1      Ligand Chemical Component Hide Identifier Formula Name Interactions BPP Search  Download  C22 H25 N4 O (4-BENZYL-PIPERIDIN-1-YL)-(5-AMIDINOMETHYL- 3AH-INDOL-2-YL-METHANONE   Ligand Explorer NA Search  Download  Na SODIUM ION   Ligand Explorer NAG Search  Download  C8 H15 N O6 N-ACETYL-D-GLUCOSAMINE   Ligand Explorer     External Ligand Annotations Hide Identifier   Binding Affinity (Sequence Identity %) BPP Search  Download  N/A in BindingDB Ka: 2e+06 M-1 - data from BindingMOAD   Kd: 500 nM - data from PDBbind       Modified Residues Hide Identifier Formula Parent Type TYS Search  C9 H11 N O6 S TYR lPeptideLinking     External Domain Annotations Hide SCOP Classification v1.75: 1 Domain - data from SCOP   CATH Classification v3.4.0: 2 Domains - data from CATH   Pfam Classification: 2 Domains - data from Pfam   GO Terms: 5 Terms - data from GO      Structural Biology Knowledgebase Data Hide     Data in orange boxes are gathered from external resources (when available). Reset Layout

Biological Assembly            View in 3D More Images... Biological assembly 1 assigned by authors Downloadable viewers: Simple Viewer Protein Workshop Ligand Explorer Kiosk Viewer Other Viewers  KiNG WebMol QuickPDB FirstGlance         MyPDB Personal Annotations Hide     Deposition Summary Hide Authors:   Chirgadze, N.Y. Deposition:   1999-10-04 Release:   1999-10-20 Last Modified (REVDAT):   2011-07-13     Revision History    Hide Mouse over text for details 2011-07-13 Polymer description 2011-07-13 Version format compliance 2011-07-13 Atom nomenclature 2011-07-13 Binding sites and description 2011-07-13 Non-polymer description 2011-07-13 Function and keywords 2011-07-13 Linkage 2011-07-13 Sequence database correspondence     Experimental Details Hide Method:   X-RAY DIFFRACTION Exp. Data: N/A Resolution[Å]:   2.07 R-Value: 0.184 (obs.) R-Free: 0.231 Space Group: C 2 Unit Cell:   Length [Å] Angles [°] a = 71.56 α = 90.00  b = 72.06 β = 101.20  c = 73.22 γ = 90.00      Molecule of the Month Hide Thrombin Trypsin Serpins Tissue Factor Fibrin