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CRYSTAL STRUCTURE OF A REPLICATION FORK DNA POLYMERASE EDITING COMPLEX AT 2.7 A RESOLUTION
DOI:10.2210/pdb1clq/pdb   NDB ID: PD0079
1CLQ
Primary Citation
 
 
  •   Molecular Description Hide
    Classification: Transferase/dna
    Structure Weight: 112584.59
    Molecule: DNA (5'-D(*GP*CP*GP*GP*AP*AP*CP*TP*AP*CP*T)-3')
    Polymer: 1 Type: dna Length: 11
    Chains: E
    Molecule: DNA (5'-D(*AP*GP*TP*AP*GP*TP*TP*CP*CP*GP*CP*G)-3')
    Polymer: 2 Type: dna Length: 12
    Chains: D
    Molecule: PROTEIN (DNA POLYMERASE)
    Polymer: 3 Type: protein Length: 903
    Chains: A
    EC#: 2.7.7.7   
    Fragment: RESIDUES 1-903
    Organism: Enterobacteria phage RB69
    Gene Name: 43
    UniProtKB: Protein Feature View | Search PDB | Q38087  
     
  •   Structure Validation Hide

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  • MolProbity Ramachandran Plot
     

  •   Related Citations in PDB Entry (REMARK 1) Hide
     
  •   Source Hide
    Polymer: 1
    Scientific Name: Synthetic construct   Taxonomy    
    Polymer: 2
    Scientific Name: Synthetic construct   Taxonomy    
    Polymer: 3
    Scientific Name: Enterobacteria phage rb69   Taxonomy   Expression System: Escherichia coli  
     
  •   Ligand Chemical Component Hide
    Identifier Formula Name View Interactions
    CA
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    CA Ca
    CALCIUM ION
    GDP
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    GDP C10 H15 N5 O11 P2
    GUANOSINE-5'-DIPHOSPHATE
    GDP:1CLQ
     
  •   External Domain Annotations Hide
     
  •   Structural Biology Knowledgebase Data Hide
     
  • Nucleic Acid Database Hide
    View the NDB ID associated with this structure: PD0079
     
 
Data in orange boxes are gathered from external resources (when available).
 
  Biological Assembly       
Biological assembly 1 assigned by authors
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  •   Deposition Summary Hide
    Authors:   Shamoo, Y.,  Steitz, T.A.

    Deposition:   1999-04-30
    Release:   1999-10-28
    Last Modified (REVDAT):   2009-02-24
     
  •   Revision History    Hide
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    2011-07-13
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  •   Experimental Details Hide
    Method:   X-RAY DIFFRACTION
    Exp. Data:
      Structure Factors
    EDS  
    Resolution[Å]:   2.70
    R-Value: 0.230 (obs.)
    R-Free: 0.284
    Space Group: H 3
    Unit Cell:
      Length [Å] Angles [°]
    a = 209.74 α = 90.00 
    b = 209.74 β = 90.00 
    c = 114.25 γ = 120.00