1C5K

THE STRUCTURE OF TOLB, AN ESSENTIAL COMPONENT OF THE TOL-DEPENDENT TRANSLOCATION SYSTEM AND ITS INTERACTIONS WITH THE TRANSLOCATION DOMAIN OF COLICIN E9

Structural Biology Knowledgebase: 1C5K SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.0 Å
  • R-Value Free: 0.271
  • R-Value Work: 0.234

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 1C5K

Classification: TRANSPORT PROTEIN

Total Structure Weight: 47370.16

Macromolecule Entities
Molecule Chains Length Organism Details
PROTEIN (TOLB PROTEIN) A 439 Escherichia coli Fragment: ENTIRE PROTEIN
Details: IN E.COLI TOLB FORMS A HETERODIMER WITH PAL (PEPTIDOGLYCAN ASSOCIATED LIPOPROTEIN)
Gene Name(s): tolB b0740 JW5100
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
YB
Query on YB

A YTTERBIUM (III) ION
Yb
AWSFICBXMUKWSK-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.0 Å
  • R-Value Free: 0.271
  • R-Value Work: 0.234
  • Space Group: P 1 21 1

Unit Cell:

Length (Å) Angle (°)
a = 63.58 α = 90.00
b = 40.19 β = 110.22
c = 77.66 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 1999-12-05
  • Released Date: 2000-12-06
  • Deposition author(s): Carr, S., Penfold, C.N., Bamford, V., James, R., Hemmings, A.M.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4