1BY2
STRUCTURE OF M2BP SCAVENGER RECEPTOR CYSTEINE-RICH DOMAIN
- PDB DOI: https://doi.org/10.2210/pdb1BY2/pdb
- Classification: EXTRACELLULAR MODULE
- Organism(s): Homo sapiens
- Expression System: Homo sapiens
- Mutation(s): No 
- Deposited: 1998-10-23 Released: 1999-05-18 
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.00 Å
- R-Value Free: 0.218 
- R-Value Work: 0.186 
- R-Value Observed: 0.186 
wwPDB Validation   3D Report Full Report
This is version 1.3 of the entry. See complete history. 
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
---|---|---|---|---|---|
Molecule | Chains | Sequence Length | Organism | Details | Image |
MAC-2 BINDING PROTEIN | 119 | Homo sapiens | Mutation(s): 0  | ||
UniProt & NIH Common Fund Data Resources | |||||
Find proteins for Q08380 (Homo sapiens) Explore Q08380  Go to UniProtKB:  Q08380 | |||||
PHAROS:  Q08380 GTEx:  ENSG00000108679  | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | Q08380 | ||||
Sequence AnnotationsExpand | |||||
|
Small Molecules
Ligands 1 Unique | |||||
---|---|---|---|---|---|
ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
NAG Query on NAG | B [auth A] | 2-acetamido-2-deoxy-beta-D-glucopyranose C8 H15 N O6 OVRNDRQMDRJTHS-FMDGEEDCSA-N |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.00 Å
- R-Value Free: 0.218 
- R-Value Work: 0.186 
- R-Value Observed: 0.186 
- Space Group: P 43 21 2
Unit Cell:
Length ( Å ) | Angle ( ˚ ) |
---|---|
a = 44.63 | α = 90 |
b = 44.63 | β = 90 |
c = 134.54 | γ = 90 |
Software Name | Purpose |
---|---|
MOSFLM | data reduction |
SCALA | data scaling |
CCP4 | model building |
X-PLOR | refinement |
CCP4 | data scaling |
CCP4 | phasing |
Entry History 
Deposition Data
- Released Date: 1999-05-18  Deposition Author(s): Hohenester, E., Sasaki, T., Timpl, R.
Revision History (Full details and data files)
- Version 1.0: 1999-05-18
Type: Initial release - Version 1.1: 2008-03-24
Changes: Version format compliance - Version 1.2: 2011-07-13
Changes: Non-polymer description, Version format compliance - Version 1.3: 2020-07-29
Type: Remediation
Reason: Carbohydrate remediation
Changes: Advisory, Data collection, Derived calculations, Structure summary