38.87
7.541
9.478
16.921
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1
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40.34
6.893
8.018
16.798
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2
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38.10
5.458
8.190
17.143
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2
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38.63
7.819
7.072
17.479
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40.98
6.947
7.623
15.231
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38.54
8.105
6.984
14.603
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35.27
8.502
7.587
13.247
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2
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33.51
7.462
8.374
12.608
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35.23
9.704
8.508
13.278
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35.71
10.488
8.091
12.188
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9.126
9.915
13.112
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31.80
7.880
9.683
12.273
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30.25
6.731
10.571
12.516
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29.87
6.135
10.820
13.730
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29.54
5.108
11.623
13.676
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28.63
5.001
11.935
12.333
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29.02
4.063
12.772
11.682
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29.56
3.123
13.416
12.181
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28.35
4.281
12.835
10.304
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28.21
5.283
12.164
9.653
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27.88
5.315
12.361
8.329
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2
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28.95
6.176
11.367
10.253
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29.29
5.983
11.298
11.600
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2
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36.39
12.049
8.391
12.043
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3
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35.64
12.643
7.178
11.431
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3
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36.24
12.615
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13.271
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3
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36.96
11.984
9.563
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11.458
9.366
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3
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33.45
11.246
10.722
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3
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32.15
10.154
11.394
9.635
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12.410
11.719
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3
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35.79
12.831
11.938
7.724
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3
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11.837
12.967
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3
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31.12
10.348
12.786
9.478
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3
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29.40
9.308
13.489
10.328
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3
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29.67
8.360
14.264
9.698
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3
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29.69
8.314
14.462
8.502
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3
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1
3
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O
30.25
7.443
14.844
10.521
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3
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1
3
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30.20
7.355
14.735
11.891
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3
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30.54
6.461
15.323
12.510
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3
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O
29.40
8.369
13.902
12.493
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3
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3
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30.71
8.420
13.687
13.979
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3
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1
3
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C
28.92
9.277
13.328
11.697
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3
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1
3
1.00
1
C
34.82
14.117
12.751
7.232
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4
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1
4
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34.77
14.614
12.012
6.051
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4
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1
4
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O
33.82
15.051
13.147
8.293
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4
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1
4
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O
34.00
13.330
14.036
6.774
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4
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O
36.20
12.369
13.832
5.782
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4
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1
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38.34
11.733
15.168
5.528
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4
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1
4
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38.46
10.882
15.443
6.652
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4
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O
39.82
12.722
16.316
5.489
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4
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1
4
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C
43.72
12.830
16.743
4.122
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O
38.44
12.134
17.376
6.427
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4
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1
4
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C
37.00
10.781
16.825
6.867
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4
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1
4
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C
35.23
10.496
16.950
8.293
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4
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1
4
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N
34.64
11.262
16.439
9.306
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4
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1
4
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C
34.65
10.795
16.686
10.506
A
N7
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4
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N7
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1
4
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N
33.11
9.632
17.396
10.265
A
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4
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A
C5
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1
4
1.00
1
C
32.51
8.678
17.946
11.134
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4
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1
4
1.00
1
C
33.78
8.769
17.839
12.460
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4
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1
4
1.00
1
N
31.79
7.634
18.604
10.605
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4
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1
4
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1
N
33.39
7.581
18.709
9.272
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4
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1
4
1.00
1
C
33.76
8.415
18.224
8.342
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4
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1
4
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N
33.79
9.434
17.570
8.910
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4
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1
4
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C
45.16
13.814
17.928
3.664
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5
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P
DC
1
5
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P
45.91
13.945
17.803
2.191
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5
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1
5
1.00
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O
44.48
15.007
17.933
4.559
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5
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1
5
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O
43.87
13.009
19.271
3.962
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5
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1
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O
44.08
11.624
19.448
3.696
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5
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1
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44.51
11.174
20.635
4.540
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5
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1
5
1.00
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44.11
10.876
20.241
5.913
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5
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1
5
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O
44.24
12.251
21.709
4.674
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5
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1
5
1.00
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C
43.67
11.769
22.922
4.153
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5
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1
5
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O
43.37
12.551
21.790
6.176
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5
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A
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1
5
1.00
1
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42.55
11.219
21.324
6.759
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5
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C1'
DC
1
5
1.00
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C
40.28
11.232
20.900
8.212
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5
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1
5
1.00
1
N
39.71
10.212
21.311
9.098
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C2
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5
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1
5
1.00
1
C
38.79
9.281
22.032
8.696
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O2
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5
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O2
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1
5
1.00
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O
39.00
10.283
20.895
10.398
A
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5
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N3
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1
5
1.00
1
N
38.64
11.296
20.120
10.822
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5
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C4
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1
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1.00
1
C
37.36
11.333
19.722
12.103
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5
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1
5
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1
N
38.68
12.326
19.699
9.933
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5
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1
5
1.00
1
C
39.39
12.255
20.110
8.662
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5
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C6
DC
1
5
1.00
1
C
45.77
12.824
23.998
3.646
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6
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P
DG
1
6
1.00
1
P
48.15
12.234
24.541
2.405
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6
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1
6
1.00
1
O
43.14
14.193
23.404
3.649
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6
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1
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O
46.93
12.754
25.150
4.757
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6
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1
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O
49.88
11.745
26.144
4.720
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6
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1
6
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52.89
12.295
27.414
5.338
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6
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1
6
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53.41
13.001
27.043
6.548
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6
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1
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O
54.10
13.274
28.188
4.443
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6
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1
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C
54.77
13.015
29.600
4.455
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6
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O
54.75
14.644
27.878
5.037
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6
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1
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55.15
14.317
27.541
6.494
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6
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1
6
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C
56.97
15.221
26.559
7.090
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6
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1
6
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N
58.12
16.313
25.954
6.510
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6
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1
6
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C
58.27
16.956
25.131
7.292
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6
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1
6
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N
59.18
16.243
25.188
8.483
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6
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1
6
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59.61
16.460
24.507
9.719
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6
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1
6
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C
58.40
17.347
23.688
10.011
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6
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1
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O
60.04
15.502
24.862
10.672
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6
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1
6
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N
60.27
14.463
25.751
10.457
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6
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1
6
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1
C
60.94
13.633
25.967
11.490
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6
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1
6
1.00
1
N
59.36
14.252
26.395
9.310
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6
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1
6
1.00
1
N
58.47
15.174
26.066
8.370
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C4
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6
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DG
1
6
1.00
1
C
50.86
-0.074
22.551
21.052
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7
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B
O5'
DC
1
1
1.00
1
O
50.26
0.509
23.863
21.117
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C5'
DC
7
ATOM
B
C5'
DC
1
1
1.00
1
C
49.09
1.921
23.868
21.712
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C4'
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7
ATOM
B
C4'
DC
1
1
1.00
1
C
49.14
1.876
24.152
23.139
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7
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DC
1
1
1.00
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O
47.62
2.765
22.598
21.564
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C3'
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7
ATOM
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C3'
DC
1
1
1.00
1
C
45.51
4.140
22.961
21.341
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7
ATOM
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O3'
DC
1
1
1.00
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O
48.08
2.578
21.944
22.933
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DC
7
ATOM
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C2'
DC
1
1
1.00
1
C
48.56
2.632
23.182
23.831
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7
ATOM
B
C1'
DC
1
1
1.00
1
C
48.92
2.047
23.065
25.207
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N1
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7
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N1
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1
1
1.00
1
N
48.55
2.552
23.864
26.261
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C2
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7
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B
C2
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1
1
1.00
1
C
47.35
3.482
24.660
26.071
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O2
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7
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B
O2
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1
1
1.00
1
O
49.17
1.994
23.740
27.496
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N3
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7
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B
N3
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1
1
1.00
1
N
49.57
0.982
22.878
27.700
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C4
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7
ATOM
B
C4
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1
1
1.00
1
C
49.03
0.473
22.802
28.934
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N4
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7
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B
N4
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1
1
1.00
1
N
49.80
0.454
22.058
26.648
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C5
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7
ATOM
B
C5
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1
1
1.00
1
C
49.61
1.007
22.188
25.430
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C6
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7
ATOM
B
C6
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1
1
1.00
1
C
43.77
4.818
23.141
19.890
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P
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8
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B
P
DG
1
2
1.00
1
P
43.75
5.501
21.877
19.532
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8
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1
2
1.00
1
O
43.12
5.582
24.408
19.927
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8
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B
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1
2
1.00
1
O
42.19
3.587
23.360
18.900
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8
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1
2
1.00
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O
40.12
3.282
24.671
18.440
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8
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B
C5'
DG
1
2
1.00
1
C
39.13
3.732
24.844
17.008
B
C4'
DG
8
ATOM
B
C4'
DG
1
2
1.00
1
C
40.03
5.115
24.443
16.856
B
O4'
DG
8
ATOM
B
O4'
DG
1
2
1.00
1
O
38.03
3.057
23.912
16.024
B
C3'
DG
8
ATOM
B
C3'
DG
1
2
1.00
1
C
35.98
1.749
24.386
15.774
B
O3'
DG
8
ATOM
B
O3'
DG
1
2
1.00
1
O
38.07
4.001
24.011
14.821
B
C2'
DG
8
ATOM
B
C2'
DG
1
2
1.00
1
C
38.28
5.357
24.321
15.464
B
C1'
DG
8
ATOM
B
C1'
DG
1
2
1.00
1
C
36.47
6.396
23.317
15.251
B
N9
DG
8
ATOM
B
N9
DG
1
2
1.00
1
N
36.86
7.056
22.578
16.198
B
C8
DG
8
ATOM
B
C8
DG
1
2
1.00
1
C
36.34
7.937
21.744
15.709
B
N7
DG
8
ATOM
B
N7
DG
1
2
1.00
1
N
35.78
7.853
21.957
14.349
B
C5
DG
8
ATOM
B
C5
DG
1
2
1.00
1
C
35.63
8.569
21.355
13.299
B
C6
DG
8
ATOM
B
C6
DG
1
2
1.00
1
C
35.65
9.447
20.489
13.378
B
O6
DG
8
ATOM
B
O6
DG
1
2
1.00
1
O
35.98
8.194
21.853
12.054
B
N1
DG
8
ATOM
B
N1
DG
1
2
1.00
1
N
36.72
7.233
22.815
11.836
B
C2
DG
8
ATOM
B
C2
DG
1
2
1.00
1
C
36.09
6.997
23.164
10.558
B
N2
DG
8
ATOM
B
N2
DG
1
2
1.00
1
N
37.50
6.554
23.394
12.822
B
N3
DG
8
ATOM
B
N3
DG
1
2
1.00
1
N
36.81
6.918
22.919
14.049
B
C4
DG
8
ATOM
B
C4
DG
1
2
1.00
1
C
35.92
0.665
23.370
15.206
B
P
DT
9
ATOM
B
P
DT
1
3
1.00
1
P
35.59
-0.673
23.995
15.325
B
OP1
DT
9
ATOM
B
OP1
DT
1
3
1.00
1
O
33.74
0.981
22.032
15.767
B
OP2
DT
9
ATOM
B
OP2
DT
1
3
1.00
1
O
33.27
1.016
23.351
13.646
B
O5'
DT
9
ATOM
B
O5'
DT
1
3
1.00
1
O
30.43
0.447
24.295
12.745
B
C5'
DT
9
ATOM
B
C5'
DT
1
3
1.00
1
C
28.92
0.944
23.946
11.346
B
C4'
DT
9
ATOM
B
C4'
DT
1
3
1.00
1
C
27.36
2.313
23.427
11.380
B
O4'
DT
9
ATOM
B
O4'
DT
1
3
1.00
1
O
26.81
0.119
22.884
10.643
B
C3'
DT
9
ATOM
B
C3'
DT
1
3
1.00
1
C
27.78
-0.098
23.347
9.333
B
O3'
DT
9
ATOM
B
O3'
DT
1
3
1.00
1
O
26.29
0.994
21.644
10.729
B
C2'
DT
9
ATOM
B
C2'
DT
1
3
1.00
1
C
25.71
2.405
22.207
10.698
B
C1'
DT
9
ATOM
B
C1'
DT
1
3
1.00
1
C
25.81
3.431
21.359
11.397
B
N1
DT
9
ATOM
B
N1
DT
1
3
1.00
1
N
26.40
4.525
20.874
10.685
B
C2
DT
9
ATOM
B
C2
DT
1
3
1.00
1
C
26.84
4.730
21.094
9.509
B
O2
DT
9
ATOM
B
O2
DT
1
3
1.00
1
O
26.12
5.419
20.109
11.400
B
N3
DT
9
ATOM
B
N3
DT
1
3
1.00
1
N
25.86
5.327
19.786
12.749
B
C4
DT
9
ATOM
B
C4
DT
1
3
1.00
1
C
26.05
6.171
19.090
13.311
B
O4
DT
9
ATOM
B
O4
DT
1
3
1.00
1
O
24.75
4.169
20.314
13.434
B
C5
DT
9
ATOM
B
C5
DT
1
3
1.00
1
C
25.69
3.986
20.007
14.888
B
C7
DT
9
ATOM
B
C7
DT
1
3
1.00
1
C
24.95
3.291
21.069
12.748
B
C6
DT
9
ATOM
B
C6
DT
1
3
1.00
1
C
26.63
-0.765
22.478
8.164
B
P
DA
10
ATOM
B
P
DA
1
4
1.00
1
P
26.73
-1.413
23.466
7.273
B
OP1
DA
10
ATOM
B
OP1
DA
1
4
1.00
1
O
25.48
-1.520
21.298
8.661
B
OP2
DA
10
ATOM
B
OP2
DA
1
4
1.00
1
O
24.60
0.576
21.879
7.570
B
O5'
DA
10
ATOM
B
O5'
DA
1
4
1.00
1
O
23.35
1.353
22.538
6.606
B
C5'
DA
10
ATOM
B
C5'
DA
1
4
1.00
1
C
21.50
1.888
21.443
5.699
B
C4'
DA
10
ATOM
B
C4'
DA
1
4
1.00
1
C
20.75
2.801
20.591
6.415
B
O4'
DA
10
ATOM
B
O4'
DA
1
4
1.00
1
O
21.70
0.846
20.499
5.094
B
C3'
DA
10
ATOM
B
C3'
DA
1
4
1.00
1
C
22.86
1.223
20.293
3.730
B
O3'
DA
10
ATOM
B
O3'
DA
1
4
1.00
1
O
20.23
0.934
19.224
5.945
B
C2'
DA
10
ATOM
B
C2'
DA
1
4
1.00
1
C
19.97
2.384
19.219
6.412
B
C1'
DA
10
ATOM
B
C1'
DA
1
4
1.00
1
C
17.79
2.647
18.706
7.768
B
N9
DA
10
ATOM
B
N9
DA
1
4
1.00
1
N
17.73
1.948
19.009
8.903
B
C8
DA
10
ATOM
B
C8
DA
1
4
1.00
1
C
18.58
2.432
18.451
9.996
B
N7
DA
10
ATOM
B
N7
DA
1
4
1.00
1
N
17.11
3.522
17.729
9.553
B
C5
DA
10
ATOM
B
C5
DA
1
4
1.00
1
C
18.54
4.458
16.908
10.215
B
C6
DA
10
ATOM
B
C6
DA
1
4
1.00
1
C
21.79
4.412
16.666
11.526
B
N6
DA
10
ATOM
B
N6
DA
1
4
1.00
1
N
17.77
5.447
16.332
9.489
B
N1
DA
10
ATOM
B
N1
DA
1
4
1.00
1
N
16.15
5.465
16.571
8.167
B
C2
DA
10
ATOM
B
C2
DA
1
4
1.00
1
C
15.32
4.632
17.328
7.453
B
N3
DA
10
ATOM
B
N3
DA
1
4
1.00
1
N
15.92
3.676
17.885
8.191
B
C4
DA
10
ATOM
B
C4
DA
1
4
1.00
1
C
24.05
0.346
19.417
2.729
B
P
DC
11
ATOM
B
P
DC
1
5
1.00
1
P
27.43
0.756
19.945
1.409
B
OP1
DC
11
ATOM
B
OP1
DC
1
5
1.00
1
O
21.30
-1.087
19.335
3.090
B
OP2
DC
11
ATOM
B
OP2
DC
1
5
1.00
1
O
22.42
0.938
17.952
2.928
B
O5'
DC
11
ATOM
B
O5'
DC
1
5
1.00
1
O
23.08
2.292
17.656
2.656
B
C5'
DC
11
ATOM
B
C5'
DC
1
5
1.00
1
C
24.39
2.584
16.200
3.005
B
C4'
DC
11
ATOM
B
C4'
DC
1
5
1.00
1
C
25.51
2.752
16.022
4.450
B
O4'
DC
11
ATOM
B
O4'
DC
1
5
1.00
1
O
24.55
1.503
15.187
2.615
B
C3'
DC
11
ATOM
B
C3'
DC
1
5
1.00
1
C
24.18
2.106
13.995
2.106
B
O3'
DC
11
ATOM
B
O3'
DC
1
5
1.00
1
O
25.50
0.806
14.920
3.949
B
C2'
DC
11
ATOM
B
C2'
DC
1
5
1.00
1
C
25.14
2.044
14.861
4.847
B
C1'
DC
11
ATOM
B
C1'
DC
1
5
1.00
1
C
23.23
1.804
14.914
6.324
B
N1
DC
11
ATOM
B
N1
DC
1
5
1.00
1
N
23.72
2.680
14.246
7.218
B
C2
DC
11
ATOM
B
C2
DC
1
5
1.00
1
C
21.82
3.649
13.592
6.799
B
O2
DC
11
ATOM
B
O2
DC
1
5
1.00
1
O
24.69
2.444
14.332
8.563
B
N3
DC
11
ATOM
B
N3
DC
1
5
1.00
1
N
25.53
1.384
15.041
8.998
B
C4
DC
11
ATOM
B
C4
DC
1
5
1.00
1
C
26.17
1.178
15.106
10.320
B
N4
DC
11
ATOM
B
N4
DC
1
5
1.00
1
N
24.76
0.492
15.723
8.096
B
C5
DC
11
ATOM
B
C5
DC
1
5
1.00
1
C
23.05
0.733
15.635
6.780
B
C6
DC
11
ATOM
B
C6
DC
1
5
1.00
1
C
25.18
1.210
12.928
1.331
B
P
DG
12
ATOM
B
P
DG
1
6
1.00
1
P
23.19
2.154
12.027
0.624
B
OP1
DG
12
ATOM
B
OP1
DG
1
6
1.00
1
O
24.90
0.112
13.658
0.650
B
OP2
DG
12
ATOM
B
OP2
DG
1
6
1.00
1
O
27.94
0.484
12.127
2.519
B
O5'
DG
12
ATOM
B
O5'
DG
1
6
1.00
1
O
27.96
1.236
11.262
3.390
B
C5'
DG
12
ATOM
B
C5'
DG
1
6
1.00
1
C
28.22
0.349
10.131
3.851
B
C4'
DG
12
ATOM
B
C4'
DG
1
6
1.00
1
C
28.91
-0.798
10.704
4.532
B
O4'
DG
12
ATOM
B
O4'
DG
1
6
1.00
1
O
27.72
-0.197
9.287
2.716
B
C3'
DG
12
ATOM
B
C3'
DG
1
6
1.00
1
C
27.87
0.531
8.104
2.677
B
O3'
DG
12
ATOM
B
O3'
DG
1
6
1.00
1
O
28.60
-1.633
9.025
3.137
B
C2'
DG
12
ATOM
B
C2'
DG
1
6
1.00
1
C
30.66
-1.989
10.310
3.875
B
C1'
DG
12
ATOM
B
C1'
DG
1
6
1.00
1
C
33.78
-2.383
11.457
3.068
B
N9
DG
12
ATOM
B
N9
DG
1
6
1.00
1
N
35.36
-2.614
11.517
1.715
B
C8
DG
12
ATOM
B
C8
DG
1
6
1.00
1
C
37.23
-2.930
12.716
1.302
B
N7
DG
12
ATOM
B
N7
DG
1
6
1.00
1
N
37.07
-2.903
13.497
2.448
B
C5
DG
12
ATOM
B
C5
DG
1
6
1.00
1
C
38.77
-3.159
14.877
2.631
B
C6
DG
12
ATOM
B
C6
DG
1
6
1.00
1
C
40.65
-3.478
15.713
1.777
B
O6
DG
12
ATOM
B
O6
DG
1
6
1.00
1
O
39.57
-3.016
15.281
3.966
B
N1
DG
12
ATOM
B
N1
DG
1
6
1.00
1
N
38.89
-2.665
14.440
5.004
B
C2
DG
12
ATOM
B
C2
DG
1
6
1.00
1
C
37.63
-2.577
14.979
6.232
B
N2
DG
12
ATOM
B
N2
DG
1
6
1.00
1
N
38.54
-2.431
13.139
4.833
B
N3
DG
12
ATOM
B
N3
DG
1
6
1.00
1
N
36.19
-2.566
12.736
3.541
B
C4
DG
12
ATOM
B
C4
DG
1
6
1.00
1
C
45.22
-4.359
15.778
15.251
C
O3'
DC
1
ATOM
C
O3'
DC
1
1
1.00
1
O
46.43
-4.481
17.187
14.495
C
P
DG
2
ATOM
C
P
DG
1
2
1.00
1
P
44.53
-3.365
18.053
14.964
C
OP1
DG
2
ATOM
C
OP1
DG
1
2
1.00
1
O
44.81
-5.917
17.583
14.570
C
OP2
DG
2
ATOM
C
OP2
DG
1
2
1.00
1
O
44.94
-4.146
16.836
12.966
C
O5'
DG
2
ATOM
C
O5'
DG
1
2
1.00
1
O
41.85
-4.326
17.810
11.931
C
C5'
DG
2
ATOM
C
C5'
DG
1
2
1.00
1
C
38.88
-4.393
17.147
10.557
C
C4'
DG
2
ATOM
C
C4'
DG
1
2
1.00
1
C
37.31
-3.227
16.301
10.336
C
O4'
DG
2
ATOM
C
O4'
DG
1
2
1.00
1
O
38.49
-5.609
16.263
10.322
C
C3'
DG
2
ATOM
C
C3'
DG
1
2
1.00
1
C
40.76
-6.138
16.629
9.052
C
O3'
DG
2
ATOM
C
O3'
DG
1
2
1.00
1
O
36.78
-5.035
14.835
10.390
C
C2'
DG
2
ATOM
C
C2'
DG
1
2
1.00
1
C
34.31
-3.580
14.980
9.931
C
C1'
DG
2
ATOM
C
C1'
DG
1
2
1.00
1
C
30.46
-2.538
14.114
10.513
C
N9
DG
2
ATOM
C
N9
DG
1
2
1.00
1
N
28.72
-2.284
14.014
11.857
C
C8
DG
2
ATOM
C
C8
DG
1
2
1.00
1
C
27.24
-1.300
13.213
12.150
C
N7
DG
2
ATOM
C
N7
DG
1
2
1.00
1
N
25.59
-0.833
12.753
10.939
C
C5
DG
2
ATOM
C
C5
DG
1
2
1.00
1
C
26.06
0.247
11.870
10.676
C
C6
DG
2
ATOM
C
C6
DG
1
2
1.00
1
C
25.24
1.005
11.318
11.502
C
O6
DG
2
ATOM
C
O6
DG
1
2
1.00
1
O
24.51
0.432
11.639
9.310
C
N1
DG
2
ATOM
C
N1
DG
1
2
1.00
1
N
25.88
-0.355
12.212
8.346
C
C2
DG
2
ATOM
C
C2
DG
1
2
1.00
1
C
25.75
-0.037
11.871
7.088
C
N2
DG
2
ATOM
C
N2
DG
1
2
1.00
1
N
26.36
-1.372
13.054
8.585
C
N3
DG
2
ATOM
C
N3
DG
1
2
1.00
1
N
27.98
-1.569
13.298
9.908
C
C4
DG
2
ATOM
C
C4
DG
1
2
1.00
1
C
43.06
-7.659
16.422
8.549
C
P
DT
3
ATOM
C
P
DT
1
3
1.00
1
P
43.42
-8.102
17.740
8.028
C
OP1
DT
3
ATOM
C
OP1
DT
1
3
1.00
1
O
42.42
-8.454
15.714
9.583
C
OP2
DT
3
ATOM
C
OP2
DT
1
3
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40.41
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7.294
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3
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1
3
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1
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37.71
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3
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DT
1
3
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1
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37.08
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5.907
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3
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DT
1
3
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1
C
38.40
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6.858
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3
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1
3
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35.98
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3
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DT
1
3
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1
C
33.54
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3
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1
3
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1
O
35.09
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3
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DT
1
3
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1
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35.52
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6.829
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3
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DT
1
3
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1
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33.80
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7.992
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3
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1
3
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1
N
33.69
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3
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1
3
1.00
1
C
35.09
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3
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1
3
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1
O
32.58
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8.738
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3
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1
3
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1
N
32.32
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3
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1
3
1.00
1
C
31.89
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3
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1
3
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1
O
32.71
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3
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1
3
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1
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32.56
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11.789
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3
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1
3
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1
C
33.27
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C6
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3
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1
3
1.00
1
C
31.08
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4
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1
4
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1
P
33.18
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4
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4
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O
29.96
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4
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4
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O
27.79
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4
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O
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4
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4
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26.92
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4
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4
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28.06
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4
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4
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O
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4
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4
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25.98
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4
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4
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O
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4
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4
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27.54
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4
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1
4
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26.86
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4
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1
4
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1
N
26.49
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4
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1
4
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1
C
26.32
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4
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N7
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1
4
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1
N
24.88
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4
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1
4
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1
C
24.36
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4
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1
4
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1
C
23.70
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6.936
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4
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1
4
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1
N
25.42
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5.968
8.808
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4
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1
4
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1
N
26.67
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7.499
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4
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1
4
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26.47
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4
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4
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N
25.51
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6.936
6.828
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4
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4
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C
26.55
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5.935
1.033
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5
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P
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1
5
1.00
1
P
28.48
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5
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1
5
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1
O
21.96
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5
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5
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O
26.06
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5
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5
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O
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1.972
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5
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5
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26.07
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5
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5
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25.04
-5.367
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5
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O
24.96
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5
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DC
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5
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25.60
-6.151
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2.964
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5
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5
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O
24.29
-7.189
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4.545
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5
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5
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22.79
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5
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17.85
-6.428
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6.600
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5
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N1
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1
5
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1
N
15.71
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5
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1
5
1.00
1
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13.33
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5
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O2
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1
5
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1
O
14.75
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8.904
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N3
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5
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1
5
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N
16.16
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5
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1
5
1.00
1
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15.02
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9.957
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5
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1
5
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1
N
17.44
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5
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1
5
1.00
1
C
18.10
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5
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C6
DC
1
5
1.00
1
C
28.94
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P
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6
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P
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1
6
1.00
1
P
28.63
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6
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1
6
1.00
1
O
26.22
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6
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1
6
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O
28.98
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6
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6
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O
28.62
-6.359
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4.760
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6
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DG
1
6
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29.93
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5.741
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6
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DG
1
6
1.00
1
C
29.29
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6.865
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6
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1
6
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O
30.30
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6
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DG
1
6
1.00
1
C
31.85
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4.748
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6
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1
6
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O
29.08
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6.413
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6
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DG
1
6
1.00
1
C
27.93
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7.327
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6
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DG
1
6
1.00
1
C
25.59
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7.401
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N9
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6
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DG
1
6
1.00
1
N
26.16
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6.381
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C8
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6
ATOM
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C8
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1
6
1.00
1
C
25.40
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N7
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6
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DG
1
6
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1
N
24.46
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6
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C
C5
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1
6
1.00
1
C
24.94
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6
ATOM
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1
6
1.00
1
C
25.18
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O6
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6
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O6
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6
1.00
1
O
25.17
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N1
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6
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N1
DG
1
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1.00
1
N
26.01
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C2
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6
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1
6
1.00
1
C
26.65
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N2
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6
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N2
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1
6
1.00
1
N
24.89
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9.779
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6
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N3
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1
6
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1
N
25.08
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C4
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6
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DG
1
6
1.00
1
C
57.30
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1
1
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O
56.91
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DC
1
1
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56.79
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ATOM
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DC
1
1
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C
57.81
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1
1
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O
55.86
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ATOM
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DC
1
1
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1
C
52.80
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ATOM
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DC
1
1
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O
57.40
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ATOM
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DC
1
1
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C
58.93
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ATOM
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DC
1
1
1.00
1
C
59.63
-0.240
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D
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DC
1
1
1.00
1
N
59.30
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DC
1
1
1.00
1
C
58.85
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1
1
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O
58.58
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DC
1
1
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1
N
58.53
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D
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DC
1
1
1.00
1
C
57.53
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D
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1
1
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1
N
59.20
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7
ATOM
D
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DC
1
1
1.00
1
C
59.66
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C6
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7
ATOM
D
C6
DC
1
1
1.00
1
C
49.10
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P
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8
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D
P
DG
1
2
1.00
1
P
48.62
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8
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D
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DG
1
2
1.00
1
O
47.55
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1
2
1.00
1
O
45.08
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DG
1
2
1.00
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O
41.49
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DG
1
2
1.00
1
C
38.84
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ATOM
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DG
1
2
1.00
1
C
37.65
-2.781
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DG
1
2
1.00
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O
39.07
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DG
1
2
1.00
1
C
40.75
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DG
1
2
1.00
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O
37.22
-1.037
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DG
1
2
1.00
1
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33.80
-2.539
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DG
1
2
1.00
1
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30.37
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1
2
1.00
1
N
30.20
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1
2
1.00
1
C
27.69
-4.964
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D
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1
2
1.00
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N
27.20
-4.657
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D
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1
2
1.00
1
C
25.09
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1
2
1.00
1
C
24.32
-5.965
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1
2
1.00
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O
23.82
-4.610
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1
2
1.00
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25.09
-3.697
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1
2
1.00
1
C
23.88
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1
2
1.00
1
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27.37
-3.220
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8
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D
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DG
1
2
1.00
1
N
28.12
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C4
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8
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D
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DG
1
2
1.00
1
C
42.52
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P
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9
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P
DT
1
3
1.00
1
P
42.06
3.162
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9
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D
OP1
DT
1
3
1.00
1
O
40.75
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17.002
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9
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1
3
1.00
1
O
39.67
2.126
2.120
15.044
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1
3
1.00
1
O
38.26
2.491
0.883
14.450
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ATOM
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C5'
DT
1
3
1.00
1
C
37.99
2.324
0.992
12.936
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9
ATOM
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C4'
DT
1
3
1.00
1
C
36.31
1.046
1.621
12.652
D
O4'
DT
9
ATOM
D
O4'
DT
1
3
1.00
1
O
37.39
3.374
1.836
12.212
D
C3'
DT
9
ATOM
D
C3'
DT
1
3
1.00
1
C
37.87
3.873
1.172
11.028
D
O3'
DT
9
ATOM
D
O3'
DT
1
3
1.00
1
O
35.80
2.639
3.155
11.945
D
C2'
DT
9
ATOM
D
C2'
DT
1
3
1.00
1
C
33.03
1.197
2.702
11.765
D
C1'
DT
9
ATOM
D
C1'
DT
1
3
1.00
1
C
30.16
0.093
3.693
12.068
D
N1
DT
9
ATOM
D
N1
DT
1
3
1.00
1
N
28.83
-0.611
4.245
11.013
D
C2
DT
9
ATOM
D
C2
DT
1
3
1.00
1
C
28.51
-0.391
4.011
9.841
D
O2
DT
9
ATOM
D
O2
DT
1
3
1.00
1
O
28.25
-1.600
5.111
11.362
D
N3
DT
9
ATOM
D
N3
DT
1
3
1.00
1
N
30.13
-1.969
5.493
12.637
D
C4
DT
9
ATOM
D
C4
DT
1
3
1.00
1
C
30.24
-2.890
6.298
12.838
D
O4
DT
9
ATOM
D
O4
DT
1
3
1.00
1
O
30.26
-1.204
4.878
13.706
D
C5
DT
9
ATOM
D
C5
DT
1
3
1.00
1
C
31.67
-1.533
5.223
15.136
D
C7
DT
9
ATOM
D
C7
DT
1
3
1.00
1
C
29.51
-0.225
4.015
13.379
D
C6
DT
9
ATOM
D
C6
DT
1
3
1.00
1
C
39.47
5.015
1.871
10.126
D
P
DA
10
ATOM
D
P
DA
1
4
1.00
1
P
35.61
5.775
0.824
9.370
D
OP1
DA
10
ATOM
D
OP1
DA
1
4
1.00
1
O
35.90
5.689
2.924
10.946
D
OP2
DA
10
ATOM
D
OP2
DA
1
4
1.00
1
O
37.93
4.103
2.673
9.067
D
O5'
DA
10
ATOM
D
O5'
DA
1
4
1.00
1
O
34.79
3.742
2.058
7.812
D
C5'
DA
10
ATOM
D
C5'
DA
1
4
1.00
1
C
30.22
3.485
3.099
6.742
D
C4'
DA
10
ATOM
D
C4'
DA
1
4
1.00
1
C
28.71
2.447
3.998
7.183
D
O4'
DA
10
ATOM
D
O4'
DA
1
4
1.00
1
O
29.97
4.696
3.973
6.480
D
C3'
DA
10
ATOM
D
C3'
DA
1
4
1.00
1
C
30.15
4.832
4.201
5.090
D
O3'
DA
10
ATOM
D
O3'
DA
1
4
1.00
1
O
28.44
4.418
5.250
7.266
D
C2'
DA
10
ATOM
D
C2'
DA
1
4
1.00
1
C
27.20
2.905
5.335
7.192
D
C1'
DA
10
ATOM
D
C1'
DA
1
4
1.00
1
C
25.85
2.282
5.948
8.351
D
N9
DA
10
ATOM
D
N9
DA
1
4
1.00
1
N
24.59
2.614
5.754
9.665
D
C8
DA
10
ATOM
D
C8
DA
1
4
1.00
1
C
24.05
1.858
6.422
10.511
D
N7
DA
10
ATOM
D
N7
DA
1
4
1.00
1
N
22.86
0.966
7.092
9.705
D
C5
DA
10
ATOM
D
C5
DA
1
4
1.00
1
C
23.01
-0.089
7.964
10.004
D
C6
DA
10
ATOM
D
C6
DA
1
4
1.00
1
C
21.67
-0.415
8.310
11.254
D
N6
DA
10
ATOM
D
N6
DA
1
4
1.00
1
N
23.81
-0.799
8.468
8.962
D
N1
DA
10
ATOM
D
N1
DA
1
4
1.00
1
N
24.83
-0.447
8.108
7.713
D
C2
DA
10
ATOM
D
C2
DA
1
4
1.00
1
C
23.95
0.534
7.289
7.311
D
N3
DA
10
ATOM
D
N3
DA
1
4
1.00
1
N
24.63
1.210
6.814
8.366
D
C4
DA
10
ATOM
D
C4
DA
1
4
1.00
1
C
31.68
6.194
4.802
4.484
D
P
DC
11
ATOM
D
P
DC
1
5
1.00
1
P
31.09
6.420
4.230
3.136
D
OP1
DC
11
ATOM
D
OP1
DC
1
5
1.00
1
O
29.61
7.292
4.767
5.496
D
OP2
DC
11
ATOM
D
OP2
DC
1
5
1.00
1
O
29.34
5.682
6.285
4.288
D
O5'
DC
11
ATOM
D
O5'
DC
1
5
1.00
1
O
29.14
4.523
6.466
3.508
D
C5'
DC
11
ATOM
D
C5'
DC
1
5
1.00
1
C
28.96
4.110
7.909
3.666
D
C4'
DC
11
ATOM
D
C4'
DC
1
5
1.00
1
C
28.88
3.461
8.066
4.959
D
O4'
DC
11
ATOM
D
O4'
DC
1
5
1.00
1
O
28.09
5.281
8.903
3.646
D
C3'
DC
11
ATOM
D
C3'
DC
1
5
1.00
1
C
27.80
4.907
10.091
2.899
D
O3'
DC
11
ATOM
D
O3'
DC
1
5
1.00
1
O
26.87
5.466
9.179
5.136
D
C2'
DC
11
ATOM
D
C2'
DC
1
5
1.00
1
C
27.51
3.989
9.247
5.525
D
C1'
DC
11
ATOM
D
C1'
DC
1
5
1.00
1
C
26.20
3.690
9.376
6.985
D
N1
DC
11
ATOM
D
N1
DC
1
5
1.00
1
N
26.26
2.606
10.150
7.391
D
C2
DC
11
ATOM
D
C2
DC
1
5
1.00
1
C
26.04
1.915
10.698
6.545
D
O2
DC
11
ATOM
D
O2
DC
1
5
1.00
1
O
26.70
2.338
10.295
8.711
D
N3
DC
11
ATOM
D
N3
DC
1
5
1.00
1
N
27.62
3.127
9.680
9.606
D
C4
DC
11
ATOM
D
C4
DC
1
5
1.00
1
C
29.22
2.845
9.827
10.910
D
N4
DC
11
ATOM
D
N4
DC
1
5
1.00
1
N
26.41
4.238
8.879
9.218
D
C5
DC
11
ATOM
D
C5
DC
1
5
1.00
1
C
26.34
4.484
8.764
7.911
D
C6
DC
11
ATOM
D
C6
DC
1
5
1.00
1
C
25.74
5.931
11.065
2.133
D
P
DG
12
ATOM
D
P
DG
1
6
1.00
1
P
27.48
5.053
11.732
1.148
D
OP1
DG
12
ATOM
D
OP1
DG
1
6
1.00
1
O
24.59
7.119
10.267
1.763
D
OP2
DG
12
ATOM
D
OP2
DG
1
6
1.00
1
O
25.40
6.371
12.223
3.125
D
O5'
DG
12
ATOM
D
O5'
DG
1
6
1.00
1
O
25.52
5.318
13.045
3.658
D
C5'
DG
12
ATOM
D
C5'
DG
1
6
1.00
1
C
25.20
5.854
14.232
4.426
D
C4'
DG
12
ATOM
D
C4'
DG
1
6
1.00
1
C
24.67
6.600
13.763
5.563
D
O4'
DG
12
ATOM
D
O4'
DG
1
6
1.00
1
O
25.98
6.799
15.111
3.625
D
C3'
DG
12
ATOM
D
C3'
DG
1
6
1.00
1
C
29.09
6.106
16.318
3.348
D
O3'
DG
12
ATOM
D
O3'
DG
1
6
1.00
1
O
26.14
7.993
15.340
4.544
D
C2'
DG
12
ATOM
D
C2'
DG
1
6
1.00
1
C
26.09
7.952
14.110
5.434
D
C1'
DG
12
ATOM
D
C1'
DG
1
6
1.00
1
C
28.91
8.590
12.914
4.929
D
N9
DG
12
ATOM
D
N9
DG
1
6
1.00
1
N
31.14
9.339
12.740
3.788
D
C8
DG
12
ATOM
D
C8
DG
1
6
1.00
1
C
32.16
9.756
11.512
3.630
D
N7
DG
12
ATOM
D
N7
DG
1
6
1.00
1
N
31.20
9.246
10.834
4.726
D
C5
DG
12
ATOM
D
C5
DG
1
6
1.00
1
C
31.80
9.369
9.484
5.111
D
C6
DG
12
ATOM
D
C6
DG
1
6
1.00
1
C
31.51
9.972
8.598
4.524
D
O6
DG
12
ATOM
D
O6
DG
1
6
1.00
1
O
33.48
8.712
9.180
6.301
D
N1
DG
12
ATOM
D
N1
DG
1
6
1.00
1
N
35.20
8.011
10.113
7.040
D
C2
DG
12
ATOM
D
C2
DG
1
6
1.00
1
C
37.39
7.421
9.689
8.173
D
N2
DG
12
ATOM
D
N2
DG
1
6
1.00
1
N
34.33
7.881
11.393
6.690
D
N3
DG
12
ATOM
D
N3
DG
1
6
1.00
1
N
31.75
8.524
11.682
5.526
D
C4
DG
12
ATOM
D
C4
DG
1
6
1.00
1
C
35.94
-8.276
1.942
11.914
C
N
SAU
7
HETATM
E
N
SAU
2
1.00
1
N
46.07
-12.204
5.411
7.513
C
C1
SAU
7
HETATM
E
C1
SAU
2
1.00
1
C
45.56
-11.805
5.037
8.877
C
O1
SAU
7
HETATM
E
O1
SAU
2
1.00
1
O
43.18
-10.700
3.682
7.411
C
C2
SAU
7
HETATM
E
C2
SAU
2
1.00
1
C
45.09
-11.544
4.444
6.639
C
O2
SAU
7
HETATM
E
O2
SAU
2
1.00
1
O
43.07
-10.858
4.048
8.820
C
C3
SAU
7
HETATM
E
C3
SAU
2
1.00
1
C
37.73
-4.050
-2.126
13.465
C
O3
SAU
7
HETATM
E
O3
SAU
2
1.00
1
O
40.79
-9.790
2.715
7.026
C
C4
SAU
7
HETATM
E
C4
SAU
2
1.00
1
C
38.93
-5.468
-0.580
14.440
C
O4
SAU
7
HETATM
E
O4
SAU
2
1.00
1
O
38.86
-9.029
2.112
8.031
C
C5
SAU
7
HETATM
E
C5
SAU
2
1.00
1
C
37.87
-9.181
2.468
9.490
C
C6
SAU
7
HETATM
E
C6
SAU
2
1.00
1
C
40.82
-10.112
3.458
9.843
C
C7
SAU
7
HETATM
E
C7
SAU
2
1.00
1
C
38.25
-8.121
1.146
7.631
C
C8
SAU
7
HETATM
E
C8
SAU
2
1.00
1
C
37.79
-7.310
0.475
8.538
C
C9
SAU
7
HETATM
E
C9
SAU
2
1.00
1
C
36.50
-8.299
1.744
10.487
C
C10
SAU
7
HETATM
E
C10
SAU
2
1.00
1
C
35.63
-7.457
1.232
12.719
C
C12
SAU
7
HETATM
E
C12
SAU
2
1.00
1
C
36.23
-6.570
0.266
12.239
C
C13
SAU
7
HETATM
E
C13
SAU
2
1.00
1
C
35.72
-6.471
-0.029
10.785
C
C14
SAU
7
HETATM
E
C14
SAU
2
1.00
1
C
36.00
-7.367
0.728
9.899
C
C15
SAU
7
HETATM
E
C15
SAU
2
1.00
1
C
35.64
-5.586
-0.988
10.271
C
C18
SAU
7
HETATM
E
C18
SAU
2
1.00
1
C
36.83
-4.733
-1.737
11.090
C
C19
SAU
7
HETATM
E
C19
SAU
2
1.00
1
C
37.22
-4.760
-1.516
12.468
C
C20
SAU
7
HETATM
E
C20
SAU
2
1.00
1
C
37.20
-5.654
-0.537
13.087
C
C21
SAU
7
HETATM
E
C21
SAU
2
1.00
1
C
37.95
-4.662
-1.753
14.730
C
C23
SAU
7
HETATM
E
C23
SAU
2
1.00
1
C
35.37
-9.147
2.908
12.585
C
C25
SAU
7
HETATM
E
C25
SAU
2
1.00
1
C
49.70
8.491
9.207
1.027
D
CA
CA
1
HETATM
F
CA
CA
3
1.00
1
CA
32.86
1.760
13.627
14.471
A
O
HOH
7
HETATM
G
O
HOH
4
1.00
1
O
29.49
2.785
10.935
15.989
A
O
HOH
8
HETATM
G
O
HOH
4
1.00
1
O
23.05
6.684
17.831
15.658
B
O
HOH
1
HETATM
H
O
HOH
4
1.00
1
O
15.87
0.639
6.289
4.692
B
O
HOH
3
HETATM
H
O
HOH
4
1.00
1
O
19.32
11.877
4.863
3.472
D
O
HOH
4
HETATM
I
O
HOH
4
1.00
1
O
0.033342
0.019250
0.000000
0.000000
0.038500
0.000000
0.000000
0.000000
0.008398
0.000000
0.000000
0.000000
Ferraroni, M.
Bazzicalupi, C.
Gratteri, P.
Bilia, A.R.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
24
90.000
90.000
120.000
29.992
29.992
119.069
Ca 2
40.078
CALCIUM ION
non-polymer
C10 H14 N5 O6 P
331.222
y
2'-DEOXYADENOSINE-5'-MONOPHOSPHATE
DNA linking
C9 H14 N3 O7 P
307.197
y
2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE
DNA linking
C10 H14 N5 O7 P
347.221
y
2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE
DNA linking
C10 H15 N2 O8 P
322.208
y
THYMIDINE-5'-MONOPHOSPHATE
DNA linking
H2 O
18.015
WATER
non-polymer
C20 H14 N O4 1
332.329
13-methyl[1,3]benzodioxolo[5,6-c][1,3]dioxolo[4,5-i]phenanthridin-13-ium
Sanguinarine
non-polymer
N
1
N
CA
N
2
N
O
N
3
N
P
N
4
N
O
N
5
N
O
N
6
N
O
N
7
N
C
N
8
R
C
N
9
N
O
N
10
S
C
N
11
N
O
N
12
N
C
N
13
R
C
Y
14
N
N
Y
15
N
C
Y
16
N
N
Y
17
N
C
Y
18
N
C
N
19
N
N
Y
20
N
N
Y
21
N
C
Y
22
N
N
Y
23
N
C
N
24
N
H
N
25
N
H
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
O
N
39
N
P
N
40
N
O
N
41
N
O
N
42
N
O
N
43
N
C
N
44
R
C
N
45
N
O
N
46
S
C
N
47
N
O
N
48
N
C
N
49
R
C
N
50
N
N
N
51
N
C
N
52
N
O
N
53
N
N
N
54
N
C
N
55
N
N
N
56
N
C
N
57
N
C
N
58
N
H
N
59
N
H
N
60
N
H
N
61
N
H
N
62
N
H
N
63
N
H
N
64
N
H
N
65
N
H
N
66
N
H
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
O
N
73
N
P
N
74
N
O
N
75
N
O
N
76
N
O
N
77
N
C
N
78
R
C
N
79
N
O
N
80
S
C
N
81
N
O
N
82
N
C
N
83
R
C
Y
84
N
N
Y
85
N
C
Y
86
N
N
Y
87
N
C
N
88
N
C
N
89
N
O
N
90
N
N
N
91
N
C
N
92
N
N
N
93
N
N
Y
94
N
C
N
95
N
H
N
96
N
H
N
97
N
H
N
98
N
H
N
99
N
H
N
100
N
H
N
101
N
H
N
102
N
H
N
103
N
H
N
104
N
H
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
H
N
109
N
O
N
110
N
P
N
111
N
O
N
112
N
O
N
113
N
O
N
114
N
C
N
115
R
C
N
116
N
O
N
117
S
C
N
118
N
O
N
119
N
C
N
120
R
C
N
121
N
N
N
122
N
C
N
123
N
O
N
124
N
N
N
125
N
C
N
126
N
O
N
127
N
C
N
128
N
C
N
129
N
C
N
130
N
H
N
131
N
H
N
132
N
H
N
133
N
H
N
134
N
H
N
135
N
H
N
136
N
H
N
137
N
H
N
138
N
H
N
139
N
H
N
140
N
H
N
141
N
H
N
142
N
H
N
143
N
H
N
144
N
H
N
145
N
O
N
146
N
H
N
147
N
H
Y
148
N
N
N
149
N
C
N
150
N
O
Y
151
N
C
N
152
N
O
Y
153
N
C
N
154
N
O
Y
155
N
C
N
156
N
O
Y
157
N
C
Y
158
N
C
Y
159
N
C
Y
160
N
C
Y
161
N
C
Y
162
N
C
Y
163
N
C
Y
164
N
C
Y
165
N
C
Y
166
N
C
Y
167
N
C
Y
168
N
C
Y
169
N
C
Y
170
N
C
N
171
N
C
N
172
N
C
N
173
N
H
N
174
N
H
N
175
N
H
N
176
N
H
N
177
N
H
N
178
N
H
N
179
N
H
N
180
N
H
N
181
N
H
N
182
N
H
N
183
N
H
N
184
N
H
N
185
N
H
N
186
N
H
N
1
N
sing
N
2
N
sing
N
3
N
doub
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
sing
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
sing
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
Y
24
N
sing
Y
25
N
sing
Y
26
N
doub
N
27
N
sing
Y
28
N
sing
Y
29
N
sing
Y
30
N
doub
N
31
N
sing
Y
32
N
doub
N
33
N
sing
N
34
N
sing
Y
35
N
sing
Y
36
N
doub
N
37
N
sing
Y
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
doub
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
sing
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
sing
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
sing
N
62
N
sing
N
63
N
sing
N
64
N
doub
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
doub
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
doub
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
sing
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
Y
97
N
sing
Y
98
N
sing
Y
99
N
doub
N
100
N
sing
Y
101
N
sing
N
102
N
sing
Y
103
N
doub
N
104
N
doub
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
sing
N
109
N
doub
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
sing
N
114
N
sing
N
115
N
doub
N
116
N
sing
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
sing
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
sing
N
136
N
sing
N
137
N
sing
N
138
N
doub
N
139
N
sing
N
140
N
sing
N
141
N
sing
N
142
N
doub
N
143
N
sing
N
144
N
sing
N
145
N
doub
N
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
sing
Y
152
N
doub
Y
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
sing
Y
159
N
doub
Y
160
N
sing
Y
161
N
sing
N
162
N
sing
N
163
N
sing
Y
164
N
doub
N
165
N
sing
N
166
N
sing
Y
167
N
sing
Y
168
N
sing
Y
169
N
doub
Y
170
N
sing
Y
171
N
doub
Y
172
N
sing
Y
173
N
sing
Y
174
N
doub
Y
175
N
sing
Y
176
N
sing
Y
177
N
doub
Y
178
N
sing
Y
179
N
doub
Y
180
N
sing
Y
181
N
doub
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
sing
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
sing
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
UK
Chem.Commun.(Camb.)
1359-7345
47
4917
4919
10.1039/c1cc10971e
21431128
X-Ray diffraction analyses of the natural isoquinoline alkaloids Berberine and Sanguinarine complexed with double helix DNA d(CGTACG)
2011
10.2210/pdb3nx5/pdb
pdb_00003nx5
100
1
CCD
2010-02-08
ADSC QUANTUM 315r
Si(111) monochromator
SINGLE WAVELENGTH
M
x-ray
1
0.9763
1.0
ID29
ESRF
0.9763
SYNCHROTRON
ESRF BEAMLINE ID29
1809.217
5'-D(*CP*GP*TP*AP*CP*G)-3'
4
syn
polymer
332.329
13-methyl[1,3]benzodioxolo[5,6-c][1,3]dioxolo[4,5-i]phenanthridin-13-ium
1
syn
non-polymer
40.078
CALCIUM ION
1
syn
non-polymer
18.015
water
5
nat
water
no
no
(DC)(DG)(DT)(DA)(DC)(DG)
CGTACG
A,B,C,D
polydeoxyribonucleotide
n
n
n
n
n
n
1
2.14
42.42
VAPOR DIFFUSION
6.5
MPD, MgCl2, NaCl, pH 6.5, vapor diffusion, temperature 296K
296
-14.334
1
19
B
8
A
5
-12.816
B_DG8:DC5_A
1
-4.244
-0.387
0.137
-0.395
4.355
1
20
B
9
A
4
0.990
B_DT9:DA4_A
2
-10.660
-0.794
-0.192
-0.155
-0.625
1
20
B
10
A
3
-4.087
B_DA10:DT3_A
3
-2.937
0.261
0.133
-0.271
5.279
1
19
B
11
A
2
4.665
B_DC11:DG2_A
4
1.298
0.210
-0.050
0.010
-4.681
1
19
C
2
D
11
-1.170
C_DG2:DC11_D
5
2.996
-0.141
0.008
-0.588
0.276
1
20
C
3
D
10
-6.894
C_DT3:DA10_D
6
-5.473
-0.843
0.161
-0.369
4.249
1
20
C
4
D
9
-7.581
C_DA4:DT9_D
7
-3.554
-0.502
0.151
-0.162
18.289
1
19
C
5
D
8
-0.274
C_DC5:DG8_D
8
-1.770
0.328
-0.020
-0.051
2.651
30.126
B
B
8
9
10.275
A
A
5
4
2.874
5.293
-0.352
-0.536
BB_DG8DT9:DA4DC5_AA
1
4.710
-9.143
29.300
-1.957
1.502
3.390
44.920
B
B
9
10
0.147
A
A
4
3
3.358
0.112
-0.504
0.005
BB_DT9DA10:DT3DA4_AA
2
-4.562
5.980
44.700
-0.003
0.233
3.383
26.513
B
B
10
11
3.935
A
A
3
2
3.386
1.803
0.663
-0.312
BB_DA10DC11:DG2DT3_AA
3
1.196
-2.610
26.426
-1.174
-1.118
3.254
-70.404
B
C
11
2
-5.000
A
D
2
11
3.321
5.760
-0.337
0.808
BC_DC11DG2:DC11DG2_DA
4
-0.282
-0.245
-70.198
-0.905
-0.302
3.329
22.130
C
C
2
3
-1.799
D
D
11
10
3.295
-0.690
-0.653
-0.184
CC_DG2DT3:DA10DC11_DD
5
-1.173
3.058
22.088
-0.212
1.249
3.143
42.345
C
C
3
4
2.056
D
D
10
9
3.138
1.485
0.504
-0.256
CC_DT3DA4:DT9DA10_DD
6
1.482
-2.053
42.296
-0.500
-0.553
2.784
31.093
C
C
4
5
13.602
D
D
9
8
3.011
7.227
1.012
-0.605
CC_DA4DC5:DG8DT9_DD
7
-0.321
0.605
30.259
-2.371
-1.943
chem_comp_atom
chem_comp_bond
database_2
pdbx_initial_refinement_model
struct_conn
struct_site
repository
Initial release
Version format compliance
Data collection
Database references
Derived calculations
Refinement description
1
0
2011-05-04
1
1
2011-07-13
1
2
2023-11-01
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
RCSB
Y
PDBJ
2010-07-13
REL
REL
SAU
13-methyl[1,3]benzodioxolo[5,6-c][1,3]dioxolo[4,5-i]phenanthridin-13-ium
CA
CALCIUM ION
HOH
water
Synthetic DNA
sample
3NP6
PDB ENTRY 3NP6
PDB
experimental model
SAU
1
2
SAU
SAU
7
C
CA
1
3
CA
CA
1
D
HOH
2
4
HOH
HOH
7
A
HOH
5
4
HOH
HOH
8
A
HOH
1
4
HOH
HOH
1
B
HOH
3
4
HOH
HOH
3
B
HOH
4
4
HOH
HOH
4
D
3.500
3.500
39.690
39.690
DC
1
n
1
DC
1
A
DG
2
n
2
DG
2
A
DT
3
n
3
DT
3
A
DA
4
n
4
DA
4
A
DC
5
n
5
DC
5
A
DG
6
n
6
DG
6
A
DC
7
n
1
DC
7
B
DG
8
n
2
DG
8
B
DT
9
n
3
DT
9
B
DA
10
n
4
DA
10
B
DC
11
n
5
DC
11
B
DG
12
n
6
DG
12
B
DC
1
n
1
DC
1
C
DG
2
n
2
DG
2
C
DT
3
n
3
DT
3
C
DA
4
n
4
DA
4
C
DC
5
n
5
DC
5
C
DG
6
n
6
DG
6
C
DC
7
n
1
DC
7
D
DG
8
n
2
DG
8
D
DT
9
n
3
DT
9
D
DA
10
n
4
DA
10
D
DC
11
n
5
DC
11
D
DG
12
n
6
DG
12
D
1
0.746
2
0.254
author_and_software_defined_assembly
PISA
2
dimeric
author_and_software_defined_assembly
PISA
2
dimeric
360
-3
2680
370
-2
2680
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
1
A
O5'
DC
1
A
O5'
DC
1
1
Y
1
A
C5'
DC
1
A
C5'
DC
1
1
Y
1
A
C4'
DC
1
A
C4'
DC
1
1
Y
1
A
O4'
DC
1
A
O4'
DC
1
1
Y
1
A
C3'
DC
1
A
C3'
DC
1
1
Y
1
A
C2'
DC
1
A
C2'
DC
1
1
Y
1
A
C1'
DC
1
A
C1'
DC
1
1
Y
1
A
N1
DC
1
A
N1
DC
1
1
Y
1
A
C2
DC
1
A
C2
DC
1
1
Y
1
A
O2
DC
1
A
O2
DC
1
1
Y
1
A
N3
DC
1
A
N3
DC
1
1
Y
1
A
C4
DC
1
A
C4
DC
1
1
Y
1
A
N4
DC
1
A
N4
DC
1
1
Y
1
A
C5
DC
1
A
C5
DC
1
1
Y
1
A
C6
DC
1
A
C6
DC
1
1
Y
1
C
O5'
DC
1
C
O5'
DC
1
1
Y
1
C
C5'
DC
1
C
C5'
DC
1
1
Y
1
C
C4'
DC
1
C
C4'
DC
1
1
Y
1
C
O4'
DC
1
C
O4'
DC
1
1
Y
1
C
C3'
DC
1
C
C3'
DC
1
1
Y
1
C
C2'
DC
1
C
C2'
DC
1
1
Y
1
C
C1'
DC
1
C
C1'
DC
1
1
Y
1
C
N1
DC
1
C
N1
DC
1
1
Y
1
C
C2
DC
1
C
C2
DC
1
1
Y
1
C
O2
DC
1
C
O2
DC
1
1
Y
1
C
N3
DC
1
C
N3
DC
1
1
Y
1
C
C4
DC
1
C
C4
DC
1
1
Y
1
C
N4
DC
1
C
N4
DC
1
1
Y
1
C
C5
DC
1
C
C5
DC
1
1
Y
1
C
C6
DC
1
C
C6
DC
1
1
Y
1
7.59
1.20
119.70
127.29
A
A
A
C3'
O3'
P
DT
DT
DA
3
3
4
Y
1
2.88
0.30
108.30
111.18
A
A
A
O4'
C1'
N1
DC
DC
DC
5
5
5
N
1
-3.72
0.40
104.50
100.78
B
B
B
O4'
C4'
C3'
DG
DG
DG
8
8
8
N
1
-3.20
0.50
128.60
125.40
C
C
C
N3
C4
C5
DG
DG
DG
2
2
2
N
1
4.17
0.30
108.30
112.47
C
C
C
O4'
C1'
N1
DC
DC
DC
5
5
5
N
1
4.57
0.30
108.30
112.87
D
D
D
O4'
C1'
N1
DC
DC
DC
11
11
11
N
60.940
33.9258
13.330
-22.2700
0.0000
0.0000
-22.2700
0.0000
44.5400
0.9210
0.8920
U VALUES: REFINED INDIVIDUALLY
0.2833
0.2521
0.2552
2.3100
39.6900
289
2719
9.6000
97.7300
0.3248
0.2852
1.000
1.000
0.5756
14.1560
0.2940
0.0981
0.0596
RANDOM
1
THROUGHOUT
MOLECULAR REPLACEMENT
0.0600
0.8000
0.8000
1.4000
PDB ENTRY 3NP6
MAXIMUM LIKELIHOOD
MASK
2.3100
39.6900
5
481
26
450
0
0.010
0.021
532
2.403
3.000
816
0.063
0.200
87
0.007
0.020
257
0.495
1.500
3
1.129
2.000
3
1.469
3.000
529
2.387
4.500
813
0.9740
0.7900
2.3650
24
168
192
20
87.6700
47.698
2.290
39.69
3NX5
3006
-3.000
0.051
0.051
1
20.990
4.9
96.300
0.125
0.112
2.290
2.430
6.5
1139
470
400
0.133
1
85.100
0.069
0.094
2.430
2.600
13.8
2497
473
473
0.105
1
100.000
0.044
0.076
2.600
2.810
19.5
2351
416
415
0.084
1
99.800
0.037
0.064
2.810
3.070
23.3
2171
399
399
0.071
1
100.000
0.025
0.045
3.070
3.430
27.1
1957
368
365
0.050
1
99.200
0.031
0.053
3.430
3.960
28.7
1752
331
330
0.059
1
99.700
0.028
0.048
3.960
4.840
28.5
1436
280
280
0.054
1
100.000
0.027
0.049
4.840
6.790
27.6
1093
238
232
0.055
1
97.500
0.022
0.040
6.790
39.69
25.2
451
148
112
0.046
1
75.700
data scaling
Wolfgang Kabsch
http://www.mpimf-heidelberg.mpg.de/~kabsch/xds/html_doc/xscale_program.html
XSCALE
package
phasing
Alexei Vaguine
alexei@ysbl.york.ac.uk
Fortran_77
http://www.ccp4.ac.uk/dist/html/molrep.html
MOLREP
program
refinement
Garib N. Murshudov
garib@ysbl.york.ac.uk
Fortran_77
http://www.ccp4.ac.uk/dist/html/refmac5.html
REFMAC
program
data extraction
PDB
deposit@deposit.rcsb.org
June 10, 2010
C++
http://sw-tools.pdb.org/apps/PDB_EXTRACT/
PDB_EXTRACT
package
3.10
data reduction
XDS
data scaling
XDS
The crystal structure of Sanguinarine bound to DNA d(CGTACG)
1
N
N
1
N
N
1
N
N
1
N
N
2
N
N
3
N
N
4
N
N
4
N
N
4
N
N
metalc
1.884
D
CA
1
F
CA
CA
1_555
D
DG
12
D
OP2
DG
6
1_555
hydrog
WATSON-CRICK
A
DG
2
A
N1
DG
2
1_555
B
DC
11
B
N3
DC
5
1_555
hydrog
WATSON-CRICK
A
DG
2
A
N2
DG
2
1_555
B
DC
11
B
O2
DC
5
1_555
hydrog
WATSON-CRICK
A
DG
2
A
O6
DG
2
1_555
B
DC
11
B
N4
DC
5
1_555
hydrog
TYPE_4_PAIR
A
DG
2
A
N2
DG
2
1_555
D
DG
12
D
N3
DG
6
1_555
hydrog
TYPE_4_PAIR
A
DG
2
A
N3
DG
2
1_555
D
DG
12
D
N2
DG
6
1_555
hydrog
WATSON-CRICK
A
DT
3
A
N3
DT
3
1_555
B
DA
10
B
N1
DA
4
1_555
hydrog
WATSON-CRICK
A
DT
3
A
O4
DT
3
1_555
B
DA
10
B
N6
DA
4
1_555
hydrog
WATSON-CRICK
A
DA
4
A
N1
DA
4
1_555
B
DT
9
B
N3
DT
3
1_555
hydrog
WATSON-CRICK
A
DA
4
A
N6
DA
4
1_555
B
DT
9
B
O4
DT
3
1_555
hydrog
WATSON-CRICK
A
DC
5
A
N3
DC
5
1_555
B
DG
8
B
N1
DG
2
1_555
hydrog
WATSON-CRICK
A
DC
5
A
N4
DC
5
1_555
B
DG
8
B
O6
DG
2
1_555
hydrog
WATSON-CRICK
A
DC
5
A
O2
DC
5
1_555
B
DG
8
B
N2
DG
2
1_555
hydrog
DG-DG MISPAIR
B
DG
12
B
N2
DG
6
1_555
C
DG
2
C
N3
DG
2
1_555
hydrog
WATSON-CRICK
C
DG
2
C
N1
DG
2
1_555
D
DC
11
D
N3
DC
5
1_555
hydrog
WATSON-CRICK
C
DG
2
C
N2
DG
2
1_555
D
DC
11
D
O2
DC
5
1_555
hydrog
WATSON-CRICK
C
DG
2
C
O6
DG
2
1_555
D
DC
11
D
N4
DC
5
1_555
hydrog
WATSON-CRICK
C
DT
3
C
N3
DT
3
1_555
D
DA
10
D
N1
DA
4
1_555
hydrog
WATSON-CRICK
C
DT
3
C
O4
DT
3
1_555
D
DA
10
D
N6
DA
4
1_555
hydrog
WATSON-CRICK
C
DA
4
C
N1
DA
4
1_555
D
DT
9
D
N3
DT
3
1_555
hydrog
WATSON-CRICK
C
DA
4
C
N6
DA
4
1_555
D
DT
9
D
O4
DT
3
1_555
hydrog
WATSON-CRICK
C
DC
5
C
N3
DC
5
1_555
D
DG
8
D
N1
DG
2
1_555
hydrog
WATSON-CRICK
C
DC
5
C
N4
DC
5
1_555
D
DG
8
D
O6
DG
2
1_555
hydrog
WATSON-CRICK
C
DC
5
C
O2
DC
5
1_555
D
DG
8
D
N2
DG
2
1_555
DNA
DRUG-DNA COMPLEX, DOUBLE HELIX, DNA
3NX5
PDB
1
3NX5
1
6
3NX5
1
6
3NX5
A
1
1
6
7
12
3NX5
7
12
3NX5
B
1
1
6
1
6
3NX5
1
6
3NX5
C
1
1
6
7
12
3NX5
7
12
3NX5
D
1
1
6
BINDING SITE FOR RESIDUE SAU C 7
C
SAU
7
Software
6
BINDING SITE FOR RESIDUE CA D 1
D
CA
1
Software
3
A
DC
5
A
DC
5
6
1_445
B
DC
7
B
DC
1
6
5_565
B
DG
8
B
DG
2
6
1_445
C
DC
5
C
DC
5
6
1_555
C
DG
6
C
DG
6
6
1_555
D
DG
8
D
DG
2
6
1_555
B
DG
12
B
DG
6
3
4_555
D
DG
12
D
DG
6
3
4_555
D
DG
12
D
DG
6
3
1_555
154
P 32 2 1