T-Cell ReceptorMarch 2005 Molecule of the Month by David Goodsell
doi: 10.2210/rcsb_pdb/mom_2005_3 (PDF Version, ePub Version )
Viruses are one of the major dangers that we face in everyday life, so our immune system has powerful methods to fight them. Our cells call for help when they become infected, by displaying little pieces of the viruses on their surface. When the immune system finds these viral peptides, it quickly kills the infected cell and the viruses inside. Last month, we saw how an infected cell displays viral peptides using MHC. This month, we will look at the T-cell receptor, the protein that recognizes these viral peptides.
Cytotoxic T-cells are the police force that patrols the body looking for infected cells. T-cell receptors on the surface of T-cells bind tightly to viral peptides displayed in MHC. Each T-cell has its own type of T-cell receptor, which recognizes its own type of peptide. The immune system creates a diverse collection of different of T-cells, each with a different receptor, so we are protected from many different types of infection. These different types of T-cells are created as the T-cells mature. As a stem cell changes into a T-cell, it shuffles around its genes to form a random, unique T-cell receptor. Then, through a process of selection in the thymus, all of the T-cells that happen to recognize our own normal proteins are destroyed, leaving only those that recognize foreign objects.
T-cell receptors, like the one shown here from PDB entry 1tcr, are similar to one arm of an antibody. Like antibodies, they are composed of two chains. The binding site is at the tip of the molecule, and is formed of by several loops of the protein chains. The amino acids in these loops are very different in different T-cell receptors, so they are often called hypervariable loops. Each chain also includes a segment at one end that crosses through the membrane, connecting the receptor to the cell surface. These portions are shown schematically here, since they were removed when the crystal structure was solved.
T-Cells and AIDS
The importance of this system becomes clear when we look at what happens when it is gone. HIV preferentially infects T-cells, attacking the very system that protects us from viruses. Without treatment, the virus steadily attacks T-cells, depleting the immune system. When the number of T-cells gets too low, the infected individual progresses into AIDS. Then they are susceptible to many infections, since the immune system is no longer strong enough to fight off the invaders.
A Molecular Handshake
An elaborate handshake is performed between a T-cell and an infected cell to make sure that the death sentence is warranted. The primary contact is between the T-cell receptor and the MHC-peptide complex (the peptide is in bright red here). Then, CD molecules bind to other portions of the MHC, strengthening the interaction. Two types of interaction are shown here. MHC class I, which is found on the surface of most of our cells, interacts with T-cell receptors and CD8 on cell-killing T-cells. MHC class II is found primarily on cells that specialize in finding dangerous proteins. It interacts with T-cell receptors and CD4 on other T-cells that stimulate the immune system. All of these proteins are connected to the cell membranes by flexible chains and hinges, so that they can move around and form this complex interaction. This illustration was created using several PDB entries: 1akj, 1bd2, 1fyt, 1jl4 and 1wio.
Exploring the Structure
Several structures are available that show the interaction of T-cell
receptors with an MHC-peptide complex. Two early structures, from PDB
entries 1bd2 and 2ckb, are shown here. The T-cell receptor is at the top,
MHC is at the bottom, and the peptide is shown with spacefilling spheres
the middle. The T-cell receptor interacts with the peptide and with the
upper face of the MHC protein. Notice how these two structures are
similar, but that the T-cell receptor has shifted a bit to form the optimal
interaction with the two different peptides.
This illustration was created with RasMol. You can create similar pictures by clicking on the accession codes here and picking one of the options under View Structure.
More information on T-cell receptors
P. Anton van der Merwe and S. J. Davis (2003) Molecular Interactions
Mediating T Cell Antigen Recognition. Annual Review of Immunology
J. Hennecke and D. C. Wiley (2001) T Cell Receptor-MHC Interactions Up Close. Cell 104, 1-4.
A. W. Goldrath and M. J. Bevan (1999) Selecting and Maintaining a Diverse T-cell Repertoire. Nature 402, 255-262.
© 2013 David Goodsell & RCSB Protein Data Bank