6R1P

EthR ligand complex


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP29810 mM MES, 1.4-1.6M Ammonium sulphate
Crystal Properties
Matthews coefficientSolvent content
2.6253.06

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 121.764α = 90
b = 121.764β = 90
c = 33.625γ = 90
Symmetry
Space GroupP 41 21 2

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100PIXELDECTRIS PILATUS3 S 6M2017-03-03MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONDIAMOND BEAMLINE I030.96DiamondI03

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Sym I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.88699.60.05521.36.744875
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R-Sym I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.81.998.10.49

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT5NIM1.829.5522997118599.60.178260.176930.2048RANDOM32.425
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
0.690.69-1.38
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg36.173
r_dihedral_angle_3_deg15.103
r_dihedral_angle_4_deg13.921
r_long_range_B_other9.084
r_long_range_B_refined9.082
r_scangle_other6.836
r_dihedral_angle_1_deg5.002
r_scbond_it4.531
r_scbond_other4.528
r_mcangle_other4.24
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg36.173
r_dihedral_angle_3_deg15.103
r_dihedral_angle_4_deg13.921
r_long_range_B_other9.084
r_long_range_B_refined9.082
r_scangle_other6.836
r_dihedral_angle_1_deg5.002
r_scbond_it4.531
r_scbond_other4.528
r_mcangle_other4.24
r_mcangle_it4.239
r_mcbond_it3.195
r_mcbond_other3.182
r_angle_refined_deg1.819
r_angle_other_deg1.655
r_chiral_restr0.095
r_bond_refined_d0.012
r_gen_planes_refined0.011
r_bond_other_d0.003
r_gen_planes_other0.001
r_symmetry_vdw_other
r_symmetry_hbond_refined
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_nbd_refined
r_nbd_other
r_nbtor_refined
r_nbtor_other
r_xyhbond_nbd_refined
r_xyhbond_nbd_other
r_scangle_it
r_metal_ion_refined
r_metal_ion_other
r_sphericity_bonded
r_rigid_bond_restr
r_sphericity_free
r_symmetry_vdw_refined
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms1496
Nucleic Acid Atoms
Solvent Atoms80
Heterogen Atoms25

Software

Software
Software NamePurpose
REFMACrefinement
XDSdata reduction
XSCALEdata scaling
PHASERphasing