5A21
Structure of bacteriophage SPP1 head-to-tail interface without DNA and tape measure protein
ELECTRON MICROSCOPY
Sample |
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BACTERIOPHAGE SPP1 HEAD- TO-TAIL INTERFACE |
Specimen Preparation | |
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Sample Aggregation State | PARTICLE |
Vitrification Instrument | FEI VITROBOT MARK II |
Cryogen Name | ETHANE |
Sample Vitrification Details | VITRIFICATION 1 -- CRYOGEN- ETHANE, INSTRUMENT- FEI VITROBOT |
3D Reconstruction | |
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Reconstruction Method | SINGLE PARTICLE |
Number of Particles | 18000 |
Reported Resolution (Å) | 7.2 |
Resolution Method | |
Other Details | ATOMIC COORDINATES FOR GP6, GP15, GP16, GP17 WERE OBTAINED FROM PDB FILES 2JES (LEBEDEV ET AL., EMBO J., 2007, 26, 1984), 2KBZ, 2KCA (LHUILLIER ET AL. ... |
Refinement Type | |
Symmetry Type | POINT |
Point Symmetry | C6 |
Map-Model Fitting and Refinement | |||||
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Id | 1 | ||||
Refinement Space | REAL | ||||
Refinement Protocol | FLEXIBLE FIT | ||||
Refinement Target | |||||
Overall B Value | |||||
Fitting Procedure | |||||
Details | METHOD--FLEXIBLE REFINEMENT PROTOCOL--X-RAY, NMR, PREDICTION |
Data Acquisition | |||||||||
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Detector Type | KODAK SO-163 FILM | ||||||||
Electron Dose (electrons/Å**2) | 20 |
Imaging Experiment | 1 |
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Date of Experiment | 2008-10-09 |
Temperature (Kelvin) | |
Microscope Model | FEI TECNAI F30 |
Minimum Defocus (nm) | 900 |
Maximum Defocus (nm) | 3600 |
Minimum Tilt Angle (degrees) | |
Maximum Tilt Angle (degrees) | |
Nominal CS | 2 |
Imaging Mode | BRIGHT FIELD |
Specimen Holder Model | |
Nominal Magnification | 39000 |
Calibrated Magnification | |
Source | FIELD EMISSION GUN |
Acceleration Voltage (kV) | 300 |
Imaging Details |
EM Software | ||
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Task | Software Package | Version |
MODEL FITTING | Flex-EM | |
MODEL FITTING | MODELLER | |
MODEL FITTING | UCSF Chimera | |
MODEL FITTING | VEDA | |
RECONSTRUCTION | EMAN | |
RECONSTRUCTION | IMAGIC | |
RECONSTRUCTION | SPIDER |
Image Processing | ||||
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CTF Correction Type | CTF Correction Details | Number of Particles Selected | Particle Selection Details | |
EACH PARTICLE |