4I93

Structure of the BSK8 kinase domain (SeMet labeled)


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP829315-25%(w/v) PEG3350, 200mM KSCN, pH 8.0, VAPOR DIFFUSION, HANGING DROP, temperature 293K
Crystal Properties
Matthew coefficientSolvent content
1.8633.87

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 50.898α = 90
b = 77.552β = 105.67
c = 68.147γ = 90
Symmetry
Space GroupP 1 21 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray90CCDMAR CCD 165 mmSi(111) monochromator, Dynamically bendable mirror2008-11-29MMAD
21
31
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONSLS BEAMLINE X10SA0.979670SLSX10SA
2SYNCHROTRONSLS BEAMLINE X10SA0.979160SLSX10SA
3SYNCHROTRONSLS BEAMLINE X10SA0.971490SLSX10SA

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.53598.050.04919.24.238155879966-321.682
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Rrim I (All)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.51.6970.2680.256.58

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (All)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMADTHROUGHOUT1.533.398049378964100098.10.18070.18040.2078RANDOM18.394
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-0.320.180.110.14
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg32.716
r_dihedral_angle_4_deg19.236
r_dihedral_angle_3_deg12.237
r_dihedral_angle_1_deg5.514
r_angle_refined_deg1.504
r_angle_other_deg0.813
r_chiral_restr0.082
r_bond_refined_d0.011
r_gen_planes_refined0.007
r_bond_other_d0.002
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg32.716
r_dihedral_angle_4_deg19.236
r_dihedral_angle_3_deg12.237
r_dihedral_angle_1_deg5.514
r_angle_refined_deg1.504
r_angle_other_deg0.813
r_chiral_restr0.082
r_bond_refined_d0.011
r_gen_planes_refined0.007
r_bond_other_d0.002
r_gen_planes_other0.001
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms4557
Nucleic Acid Atoms
Solvent Atoms414
Heterogen Atoms

Software

Software
Software NamePurpose
XSCALEdata scaling
REFMACrefinement
PDB_EXTRACTdata extraction
XDSdata scaling
XDSdata reduction
PHENIXphasing