3Q1I

Polo-like kinase I Polo-box domain in complex with FMPPPMSpSM phosphopeptide from TCERG1


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, SITTING DROP6.529330% PEG400, 0.1M MES, pH 6.5, VAPOR DIFFUSION, SITTING DROP, temperature 293K
Crystal Properties
Matthews coefficientSolvent content
1.8533.64

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 35.5α = 90
b = 51.5β = 101
c = 57.6γ = 90
Symmetry
Space GroupP 1 21 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray1002010-11-17MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONSOLEIL BEAMLINE PROXIMA 10.9184SOLEILPROXIMA 1

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.456.54974028438959

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (All)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT1UMW chain A1.456.544028437019193996.750.198440.197230.22156RANDOM17.809
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
0.060.370.28-0.2
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg31.649
r_dihedral_angle_4_deg15.781
r_dihedral_angle_3_deg12.727
r_dihedral_angle_1_deg5.312
r_scangle_it1.846
r_scbond_it1.122
r_angle_refined_deg0.968
r_mcangle_it0.744
r_mcbond_it0.369
r_chiral_restr0.067
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg31.649
r_dihedral_angle_4_deg15.781
r_dihedral_angle_3_deg12.727
r_dihedral_angle_1_deg5.312
r_scangle_it1.846
r_scbond_it1.122
r_angle_refined_deg0.968
r_mcangle_it0.744
r_mcbond_it0.369
r_chiral_restr0.067
r_bond_refined_d0.005
r_gen_planes_refined0.003
r_bond_other_d
r_angle_other_deg
r_gen_planes_other
r_nbd_refined
r_nbd_other
r_nbtor_refined
r_nbtor_other
r_xyhbond_nbd_refined
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_vdw_refined
r_symmetry_vdw_other
r_symmetry_hbond_refined
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_mcbond_other
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms1779
Nucleic Acid Atoms
Solvent Atoms192
Heterogen Atoms31

Software

Software
Software NamePurpose
MOLREPphasing
REFMACrefinement