2WA7

Structure of the M202V mutant of human filamin b actin binding domain at 1.85 Angstrom resolution


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
16.5PROTEIN WAS CRYSTALLIZED FROM 20% PEG 8000, 0.2 M MAGNESIUM ACETATE AND 0.1 M SODIUM CACODYLATE PH 6.5.
Crystal Properties
Matthews coefficientSolvent content
2.545

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 46.079α = 90
b = 69.828β = 90
c = 87.18γ = 90
Symmetry
Space GroupP 21 21 21

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray277IMAGE PLATERIGAKU RAXIS IVOSMIC BLUE CONFOCAL MIRRORS2007-03-22MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1ROTATING ANODERIGAKU MICROMAX-007

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.8527.8395.50.0425.84.7235372.2
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.851.9579.50.522.24.1

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUTPDB ENTRY 2WA51.8527.8322311118795.190.193580.191460.23314RANDOM37.187
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-2.15-0.242.39
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg36.481
r_dihedral_angle_4_deg18.05
r_dihedral_angle_3_deg14.367
r_dihedral_angle_1_deg5.258
r_mcangle_it1.886
r_scangle_it1.731
r_mcbond_it1.579
r_scbond_it1.241
r_angle_refined_deg1.148
r_angle_other_deg0.901
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg36.481
r_dihedral_angle_4_deg18.05
r_dihedral_angle_3_deg14.367
r_dihedral_angle_1_deg5.258
r_mcangle_it1.886
r_scangle_it1.731
r_mcbond_it1.579
r_scbond_it1.241
r_angle_refined_deg1.148
r_angle_other_deg0.901
r_mcbond_other0.367
r_nbd_refined0.211
r_symmetry_vdw_other0.197
r_nbd_other0.177
r_nbtor_refined0.169
r_symmetry_hbond_refined0.164
r_xyhbond_nbd_refined0.129
r_symmetry_vdw_refined0.112
r_nbtor_other0.084
r_chiral_restr0.071
r_bond_refined_d0.01
r_gen_planes_refined0.004
r_bond_other_d0.001
r_gen_planes_other0.001
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_mcangle_other
r_scbond_other
r_scangle_other
r_long_range_B_refined
r_long_range_B_other
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms1831
Nucleic Acid Atoms
Solvent Atoms204
Heterogen Atoms16

Software

Software
Software NamePurpose
REFMACrefinement
MOSFLMdata reduction
SCALAdata scaling
MOLREPphasing