2V8Q

Crystal structure of the regulatory fragment of mammalian AMPK in complexes with AMP


X-RAY DIFFRACTION

Crystallization

Crystal Properties
Matthews coefficientSolvent content
359

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 48.522α = 90
b = 119.39β = 90
c = 129.31γ = 90
Symmetry
Space GroupP 21 21 21

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100 MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1ROTATING ANODE

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.120990.0618.75.642012-3

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT2.120420122234990.2130.2120.237RANDOM44.84
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-2.733.06-0.33
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg35.233
r_dihedral_angle_4_deg19.941
r_dihedral_angle_3_deg18.379
r_dihedral_angle_1_deg7.475
r_scangle_it2.233
r_angle_refined_deg1.439
r_scbond_it1.435
r_mcangle_it1.157
r_mcbond_it0.682
r_nbtor_refined0.307
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg35.233
r_dihedral_angle_4_deg19.941
r_dihedral_angle_3_deg18.379
r_dihedral_angle_1_deg7.475
r_scangle_it2.233
r_angle_refined_deg1.439
r_scbond_it1.435
r_mcangle_it1.157
r_mcbond_it0.682
r_nbtor_refined0.307
r_symmetry_vdw_refined0.225
r_symmetry_hbond_refined0.216
r_nbd_refined0.212
r_xyhbond_nbd_refined0.141
r_chiral_restr0.11
r_bond_refined_d0.009
r_gen_planes_refined0.004
r_bond_other_d
r_angle_other_deg
r_gen_planes_other
r_nbd_other
r_nbtor_other
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_vdw_other
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_mcbond_other
r_mcangle_other
r_scbond_other
r_scangle_other
r_long_range_B_refined
r_long_range_B_other
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms3884
Nucleic Acid Atoms
Solvent Atoms428
Heterogen Atoms69

Software

Software
Software NamePurpose
REFMACrefinement