X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION29124% PEG3350, 0.2 M Ammonium chloride, VAPOR DIFFUSION, temperature 291K
Crystal Properties
Matthews coefficientSolvent content
2.345.1

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 46.06α = 90
b = 64.172β = 90
c = 93.383γ = 90
Symmetry
Space GroupP 21 21 21

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDADSC QUANTUM 42006-11-19MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONAPS BEAMLINE 17-ID1.0000APS17-ID

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.455099.50.04716.46.449643
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
1.451.5970.5945

Refinement

Statistics
Diffraction IDStructure Solution MethodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (All)R-WorkR-FreeMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTPDB entry 2GIV1.453049566253699.490.2060.20490.230816.276
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
0.080.351-0.431
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg33.524
r_dihedral_angle_3_deg11.687
r_dihedral_angle_4_deg9.129
r_dihedral_angle_1_deg6.006
r_scangle_it3.239
r_mcangle_it2.636
r_scbond_it2.423
r_mcbond_it1.927
r_angle_refined_deg1.392
r_angle_other_deg0.865
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg33.524
r_dihedral_angle_3_deg11.687
r_dihedral_angle_4_deg9.129
r_dihedral_angle_1_deg6.006
r_scangle_it3.239
r_mcangle_it2.636
r_scbond_it2.423
r_mcbond_it1.927
r_angle_refined_deg1.392
r_angle_other_deg0.865
r_mcbond_other0.537
r_nbd_refined0.213
r_symmetry_vdw_other0.199
r_nbtor_refined0.189
r_symmetry_hbond_refined0.189
r_nbd_other0.187
r_xyhbond_nbd_refined0.108
r_chiral_restr0.092
r_nbtor_other0.086
r_symmetry_vdw_refined0.082
r_bond_refined_d0.016
r_gen_planes_refined0.006
r_metal_ion_refined0.004
r_bond_other_d0.002
r_gen_planes_other0.001
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms2123
Nucleic Acid Atoms
Solvent Atoms149
Heterogen Atoms62

Software

Software
Software NamePurpose
DENZOdata reduction
SCALEPACKdata scaling
PHASERphasing
REFMACrefinement
PDB_EXTRACTdata extraction
ADSCdata collection