2ODV

Crystal structure of a fragment of the plakin domain of plectin, Cys to Ala mutant.


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP4.62950.1M Citrate Phosphate pH 4.6, 24% 1,2-propanediol, 6% PEG 3000, 3% Glycerol, VAPOR DIFFUSION, HANGING DROP, temperature 295K
Crystal Properties
Matthews coefficientSolvent content
2.2846.2

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 154.62α = 90
b = 26.51β = 90
c = 58.09γ = 90
Symmetry
Space GroupP 21 21 2

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDMARRESEARCH2006-10-05MMAD
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONESRF BEAMLINE BM140.9785, 0.9185ESRFBM14

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.053997.731.714.115444-334.6
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
12.052.1599.6614.2

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (All)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMADTHROUGHOUT2.0538.66154431467976497.70.212270.210060.25599RANDOM25.265
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-0.841.83-1
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg32.624
r_dihedral_angle_4_deg22.888
r_dihedral_angle_3_deg18.686
r_scangle_it4.434
r_dihedral_angle_1_deg4.371
r_scbond_it2.916
r_mcangle_it1.593
r_angle_refined_deg1.545
r_mcbond_it1.089
r_nbtor_refined0.303
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg32.624
r_dihedral_angle_4_deg22.888
r_dihedral_angle_3_deg18.686
r_scangle_it4.434
r_dihedral_angle_1_deg4.371
r_scbond_it2.916
r_mcangle_it1.593
r_angle_refined_deg1.545
r_mcbond_it1.089
r_nbtor_refined0.303
r_nbd_refined0.221
r_symmetry_hbond_refined0.214
r_symmetry_vdw_refined0.211
r_xyhbond_nbd_refined0.174
r_chiral_restr0.112
r_bond_refined_d0.017
r_gen_planes_refined0.006
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms1793
Nucleic Acid Atoms
Solvent Atoms52
Heterogen Atoms5

Software

Software
Software NamePurpose
SHELXmodel building
REFMACrefinement
MxCuBEdata collection
XDSdata reduction
XSCALEdata scaling
SHELXphasing