2N1M
NMR structure of the apo-form of the flavoprotein YP_193882.1 from Lactobacillus acidophilus NCFM
SOLUTION NMR
NMR Experiment | ||||||||
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Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
1 | 2D 1H-15N HSQC | 1.2 mM [U-99% 13C; U-98% 15N] protein, 20 mM sodium phosphate, 50 mM sodium chloride, 5 mM sodium azide | 95% H2O/5% D2O | 0.0798 | 6.0 | ambient | 308 | |
2 | 3D HNCA | 1.2 mM [U-99% 13C; U-98% 15N] protein, 20 mM sodium phosphate, 50 mM sodium chloride, 5 mM sodium azide | 95% H2O/5% D2O | 0.0798 | 6.0 | ambient | 308 | |
3 | 3D HNCACB | 1.2 mM [U-99% 13C; U-98% 15N] protein, 20 mM sodium phosphate, 50 mM sodium chloride, 5 mM sodium azide | 95% H2O/5% D2O | 0.0798 | 6.0 | ambient | 308 | |
4 | 3D 1H-15N NOESY | 1.2 mM [U-99% 13C; U-98% 15N] protein, 20 mM sodium phosphate, 50 mM sodium chloride, 5 mM sodium azide | 95% H2O/5% D2O | 0.0798 | 6.0 | ambient | 308 | |
5 | 3D 1H-13C NOESY aliphatic | 1.2 mM [U-99% 13C; U-98% 15N] protein, 20 mM sodium phosphate, 50 mM sodium chloride, 5 mM sodium azide | 95% H2O/5% D2O | 0.0798 | 6.0 | ambient | 308 | |
6 | 3D 1H-13C NOESY aromatic | 1.2 mM [U-99% 13C; U-98% 15N] protein, 20 mM sodium phosphate, 50 mM sodium chloride, 5 mM sodium azide | 95% H2O/5% D2O | 0.0798 | 6.0 | ambient | 308 |
NMR Spectrometer Information | |||
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Spectrometer | Manufacturer | Model | Field Strength |
1 | Bruker | AVANCE | 600 |
2 | Bruker | AVANCE | 800 |
NMR Refinement | ||
---|---|---|
Method | Details | Software |
molecular dynamics | CYANA |
NMR Ensemble Information | |
---|---|
Conformer Selection Criteria | target function |
Conformers Calculated Total Number | 80 |
Conformers Submitted Total Number | 20 |
Representative Model | 1 (closest to the average) |
Computation: NMR Software | ||||
---|---|---|---|---|
# | Classification | Version | Software Name | Author |
1 | refinement | CYANA | Guntert,Mumenthaler and Wuthrich | |
2 | chemical shift assignment | CYANA | Guntert,Mumenthaler and Wuthrich | |
3 | peak picking | CYANA | Guntert,Mumenthaler and Wuthrich | |
4 | data analysis | CYANA | Guntert,Mumenthaler and Wuthrich | |
5 | refinement | CANDID | Herrmann, Guntert and Wuthrich | |
6 | chemical shift assignment | CANDID | Herrmann, Guntert and Wuthrich | |
7 | peak picking | CANDID | Herrmann, Guntert and Wuthrich | |
8 | data analysis | CANDID | Herrmann, Guntert and Wuthrich | |
9 | collection | TopSpin | 3.1 | Bruker Biospin |
10 | processing | TopSpin | 3.1 | Bruker Biospin |
11 | refinement | OPAL | Luginbuhl, Guntert, Billeter and Wuthrich | |
12 | geometry optimization | OPAL | Luginbuhl, Guntert, Billeter and Wuthrich | |
13 | data analysis | CARA | Keller and Wuthrich |