X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP8277100 mM HEPES pH 8.0, 15% PEG 8000, 50 mM phosphoserine, 800 mM NaCl, 1 M urea, VAPOR DIFFUSION, HANGING DROP, temperature 277K
Crystal Properties
Matthews coefficientSolvent content
3.0860.1

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 123.739α = 90
b = 123.739β = 90
c = 283.183γ = 120
Symmetry
Space GroupH 3 2

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray112CCDADSC QUANTUM 210MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONAPS BEAMLINE 17-ID1.000APS17-ID

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
1242.7243611

Refinement

Statistics
Diffraction IDStructure Solution MethodResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENT2.1504361188.540.1760.1790.21524.53
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-0.28-0.14-0.280.42
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg32.178
r_dihedral_angle_4_deg19.089
r_dihedral_angle_3_deg13.683
r_scangle_it11.624
r_scbond_it9.579
r_mcangle_it5.878
r_dihedral_angle_1_deg5.284
r_mcbond_it5.227
r_angle_other_deg1.31
r_angle_refined_deg1.114
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg32.178
r_dihedral_angle_4_deg19.089
r_dihedral_angle_3_deg13.683
r_scangle_it11.624
r_scbond_it9.579
r_mcangle_it5.878
r_dihedral_angle_1_deg5.284
r_mcbond_it5.227
r_angle_other_deg1.31
r_angle_refined_deg1.114
r_mcbond_other0.96
r_symmetry_vdw_other0.278
r_nbd_refined0.193
r_nbd_other0.183
r_nbtor_refined0.17
r_xyhbond_nbd_refined0.162
r_symmetry_hbond_refined0.114
r_symmetry_vdw_refined0.108
r_nbtor_other0.085
r_chiral_restr0.066
r_bond_refined_d0.01
r_gen_planes_refined0.004
r_bond_other_d0.001
r_gen_planes_other0.001
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms3972
Nucleic Acid Atoms
Solvent Atoms411
Heterogen Atoms27

Software

Software
Software NamePurpose
REFMACrefinement
HKL-2000data reduction
HKL-2000data scaling
PHASERphasing