2DG9

FK506-binding protein mutant WL59 complexed with Rapamycin


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP4.629830% PEG MME 2000, 0.2M Ammonium Sulphate, pH 4.6, VAPOR DIFFUSION, HANGING DROP, temperature 298K
Crystal Properties
Matthews coefficientSolvent content
2.3948.47

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 44.119α = 90
b = 49.359β = 90
c = 51.605γ = 90
Symmetry
Space GroupP 21 21 21

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100IMAGE PLATEMARRESEARCH2003-08-29MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1ROTATING ANODEELLIOTT GX-131.5418

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.735.688.480.05220.33.71080510805
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.735.691.20.2722.63.3

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (All)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (All)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONFOURIER SYNTHESISTHROUGHOUT1.735.58108051080556788.480.209420.209420.207910.23876RANDOM33.68
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
1.75-0.95-0.8
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg28.543
r_dihedral_angle_3_deg12.096
r_dihedral_angle_4_deg8.678
r_dihedral_angle_1_deg5.726
r_angle_refined_deg1.072
r_scangle_it0.738
r_scbond_it0.513
r_mcangle_it0.4
r_nbtor_refined0.311
r_mcbond_it0.244
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg28.543
r_dihedral_angle_3_deg12.096
r_dihedral_angle_4_deg8.678
r_dihedral_angle_1_deg5.726
r_angle_refined_deg1.072
r_scangle_it0.738
r_scbond_it0.513
r_mcangle_it0.4
r_nbtor_refined0.311
r_mcbond_it0.244
r_nbd_refined0.165
r_symmetry_vdw_refined0.142
r_symmetry_hbond_refined0.108
r_xyhbond_nbd_refined0.079
r_chiral_restr0.063
r_bond_refined_d0.006
r_gen_planes_refined0.002
r_bond_other_d
r_angle_other_deg
r_gen_planes_other
r_nbd_other
r_nbtor_other
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_vdw_other
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_mcbond_other
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms795
Nucleic Acid Atoms
Solvent Atoms140
Heterogen Atoms71

Software

Software
Software NamePurpose
REFMACrefinement