2CWM

Native Crystal Structure of NO releasing inductive lectin from seeds of the Canavalia maritima (ConM)


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP7.5293Hepes-Na, ammonium sulfate, PEG 400, pH 7.5, VAPOR DIFFUSION, HANGING DROP, temperature 293K
Crystal Properties
Matthews coefficientSolvent content
2.345.5

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 67.916α = 90
b = 97.617β = 90
c = 71.021γ = 90
Symmetry
Space GroupP 21 21 2

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDMARRESEARCH2004-08-05MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONLNLS BEAMLINE D03B-MX11.4270LNLSD03B-MX1

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.9525.9197.90.122343083423811
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.952.0697.51

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (All)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (All)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT1.9524.43423832507171397.510.19870.191490.189080.23692RANDOM16.953
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
0.02-0.02
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg35.937
r_dihedral_angle_4_deg22.423
r_dihedral_angle_3_deg15.976
r_dihedral_angle_1_deg12.601
r_scangle_it4.288
r_scbond_it3.096
r_angle_refined_deg2.052
r_mcangle_it2.025
r_mcbond_it1.257
r_angle_other_deg0.974
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg35.937
r_dihedral_angle_4_deg22.423
r_dihedral_angle_3_deg15.976
r_dihedral_angle_1_deg12.601
r_scangle_it4.288
r_scbond_it3.096
r_angle_refined_deg2.052
r_mcangle_it2.025
r_mcbond_it1.257
r_angle_other_deg0.974
r_symmetry_hbond_refined0.556
r_mcbond_other0.304
r_symmetry_vdw_refined0.239
r_nbd_refined0.233
r_symmetry_vdw_other0.216
r_nbd_other0.211
r_nbtor_refined0.189
r_xyhbond_nbd_refined0.187
r_chiral_restr0.141
r_metal_ion_refined0.107
r_nbtor_other0.104
r_bond_refined_d0.021
r_gen_planes_refined0.009
r_bond_other_d0.001
r_gen_planes_other0.001
r_xyhbond_nbd_other
r_metal_ion_other
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms3602
Nucleic Acid Atoms
Solvent Atoms234
Heterogen Atoms4

Software

Software
Software NamePurpose
REFMACrefinement
MAR345data collection
CCP4data scaling
MOLREPphasing