6HMV

Crystal structure of human ACBD3 GOLD domain in complex with 3A protein of enterovirus-D68 (fusion protein, LVVY mutant)


Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
APF13897e6hmvA1 A: beta sandwichesX: jelly-rollH: Concanavalin A-likeT: Galactose-binding domain-likeF: PF13897ECOD (1.6)
BPF08727e6hmvB1 A: alpha duplicates or obligate multimersX: Soluble domain of poliovirus core protein 3a (From Topology)H: Soluble domain of poliovirus core protein 3a (From Topology)T: Soluble domain of poliovirus core protein 3aF: PF08727ECOD (1.6)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
PF13897Golgi-dynamics membrane-trafficking (GOLD_2)Golgi-dynamics membrane-traffickingSec14-like Golgi-trafficking domain The GOLD domain is always found combined with lipid- or membrane-association domains [1].Domain
PF08727Poliovirus 3A protein like (P3A)Poliovirus 3A protein likeThis domain is found in positive-strand RNA viruses. The 3A protein is a critical component of the poliovirus replication complex, and is also an inhibitor of host cell ER to Golgi transport.Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
Golgi resident protein GCP60
Genome polyprotein

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
IPR022408Acyl-CoA-binding protein, ACBP, conserved siteConserved Site
IPR000582Acyl-CoA-binding protein, ACBPDomain
IPR009038GOLD domainDomain
IPR014352FERM/acyl-CoA-binding protein superfamilyHomologous Superfamily
IPR036598GOLD domain superfamilyHomologous Superfamily
IPR035984Acyl-CoA binding protein superfamilyHomologous Superfamily
IPR002527Picornavirus 2B proteinDomain
IPR043128Reverse transcriptase/Diguanylate cyclase domainHomologous Superfamily
IPR000199Peptidase C3A/C3B, picornaviralDomain
IPR001676Picornavirus capsidDomain
IPR014759Helicase, superfamily 3, single-stranded RNA virusDomain
IPR027417P-loop containing nucleoside triphosphate hydrolaseHomologous Superfamily
IPR000081Peptidase C3, picornavirus core protein 2ADomain
IPR029053Viral coat protein subunitHomologous Superfamily
IPR009003Peptidase S1, PA clanHomologous Superfamily
IPR033703Picornavirus/Calicivirus coat proteinDomain
IPR036203Poliovirus core protein 3a, soluble domainHomologous Superfamily
IPR001205RNA-directed RNA polymerase, C-terminal domainDomain
IPR003593AAA+ ATPase domainDomain
IPR003138Picornavirus coat protein VP4Family
IPR043502DNA/RNA polymerase superfamilyHomologous Superfamily
IPR044067Picornavirales 3C/3C-like protease domainDomain
IPR014838Poliovirus 3A protein-likeDomain
IPR043504Peptidase S1, PA clan, chymotrypsin-like foldHomologous Superfamily
IPR007094RNA-directed RNA polymerase, catalytic domainDomain
IPR000605Helicase, superfamily 3, single-stranded DNA/RNA virusDomain